SMTL ID : 4bfi.1

Structure of the complex of the extracellular portions of mouse CD200R and mouse CD200

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.22 Å

Oligo State

hetero-1-1-mer

Ligands

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: K.66, N.68 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.68 NAG.2: 3 residues within 4Å: Chain A: G.74, N.76, Q.97 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.97 Hydrogen bonds: A:G.74, A:N.76 NAG.5: 5 residues within 4Å: Chain A: L.96, A.143, H.165, N.167, T.169 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.96 Hydrogen bonds: A:N.167, A:T.169 NAG.6: 3 residues within 4Å: Chain A: L.193, G.195, N.196 No protein-ligand interaction detected (PLIP) NAG.7: 2 residues within 4Å: Chain A: Q.17, N.19 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.19 NAG.8: 4 residues within 4Å: Chain B: I.56, K.61, N.65, W.79 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.79 NAG.9: 3 residues within 4Å: Chain B: R.20, S.22, N.73 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.20, B:R.20, B:S.22, B:K.24 NAG.10: 2 residues within 4Å: Chain B: H.14, N.80 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.80 NAG.11: 4 residues within 4Å: Chain B: F.122, N.127, I.168, R.170 No protein-ligand interaction detected (PLIP) NAG.12: 5 residues within 4Å: Chain B: W.142, T.147, G.148, I.149, N.151 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:W.142 Hydrogen bonds: B:G.146 NAG.13: 6 residues within 4Å: Chain B: V.111, I.114, H.158, S.159, N.160, T.162 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.111, B:I.114, B:T.162 Hydrogen bonds: B:N.160, B:N.160, B:T.162, B:T.162

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: I.59, T.70, I.77 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.70, A:T.70, A:I.77, A:I.77

1 x CYS: CYSTEINE(Non-covalent)

CYS.4: 3 residues within 4Å: Chain A: L.31, C.33, E.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hatherley, D. et al., Structures of Cd200/Cd200 Receptor Family and Implications for Topology, Regulation, and Evolution. Structure (2013)

Release Date

2013-05-01

Peptides

CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 1: A
OX-2 MEMBRANE GLYCOPROTEIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 1

OX-2 MEMBRANE GLYCOPROTEIN

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