SMTL ID : 4bgw.1

Crystal Structure of H5 (VN1194) Influenza Haemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.165, N.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.236 NAG-NAG.5: 2 residues within 4Å: Chain C: N.165, N.236 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.236 NAG-NAG.9: 2 residues within 4Å: Chain E: N.165, N.236 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.236

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 3 residues within 4Å: Chain B: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 3 residues within 4Å: Chain D: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 3 residues within 4Å: Chain F: E.147, E.150, N.154 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: K.22, N.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.22 Hydrogen bonds: A:N.23 NAG.7: 2 residues within 4Å: Chain C: K.22, N.23 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:K.22 Hydrogen bonds: C:N.23 NAG.11: 2 residues within 4Å: Chain E: K.22, N.23 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.22 Hydrogen bonds: E:N.23

3 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 6 residues within 4Å: Chain A: C.4 Chain B: W.14, H.25, Y.34, N.135, C.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.34, B:N.135 Salt bridges: B:H.25 EPE.8: 6 residues within 4Å: Chain C: C.4 Chain D: W.14, H.25, Y.34, N.135, C.137 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Y.34, D:N.135 Salt bridges: D:H.25 EPE.12: 6 residues within 4Å: Chain E: C.4 Chain F: W.14, H.25, Y.34, N.135, C.137 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:Y.34, F:N.135 Salt bridges: F:H.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiong, X. et al., Receptor Binding by a Ferret-Transmissible H5 Avian Influenza Virus. Nature (2013)

Release Date

2013-04-24

Peptides

HEMAGGLUTININ: ACE
HEMAGGLUTININ: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

HEMAGGLUTININ

HEMAGGLUTININ

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