SMTL ID : 4bkp.1 (1 other biounit)

Crystal structure of human GDP-L-fucose synthase with bound NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: G.29, G.30, S.31, G.32, L.33, V.34, S.57, S.58, A.61, D.62, L.63, T.64, L.84, A.85, A.86, V.88, M.108, C.127, L.128, Y.158, K.162, P.185, T.186, V.188, H.201, R.335 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:P.185, A:V.188 Hydrogen bonds: A:G.29, A:S.31, A:S.31, A:S.31, A:L.33, A:V.34, A:S.58, A:S.58, A:S.58, A:D.62, A:D.62, A:L.63, A:L.84, A:A.86, A:Y.158, A:K.162, A:V.188 Salt bridges: A:R.335 NAP.3: 26 residues within 4Å: Chain B: G.29, S.31, G.32, L.33, V.34, S.57, S.58, A.61, D.62, L.63, T.64, L.84, A.85, A.86, V.88, M.108, C.127, L.128, S.129, Y.158, K.162, P.185, T.186, V.188, H.201, R.335 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.188 Hydrogen bonds: B:G.29, B:S.31, B:S.31, B:S.31, B:L.33, B:V.34, B:S.58, B:S.58, B:S.58, B:D.62, B:L.63, B:L.84, B:A.86, B:Y.158, B:Y.158, B:K.162, B:V.188, B:H.201 Salt bridges: B:R.335

1 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 5 residues within 4Å: Chain A: T.64, R.103, K.104, H.107 Chain B: R.70 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.64, A:R.103, A:R.103 Salt bridges: A:R.103, A:K.104, A:K.104, A:H.107, A:H.107, B:R.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vollmar, M. et al., Crystal Structure of Human Gdp-L-Fucose Synthase with Bound Nadp. To be Published

Release Date

2013-06-12

Peptides

GDP-L-FUCOSE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GDP-L-FUCOSE SYNTHASE

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