SMTL ID : 4bkp.2 (1 other biounit)

Crystal structure of human GDP-L-fucose synthase with bound NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: G.29, G.30, S.31, G.32, L.33, V.34, S.57, S.58, A.61, D.62, L.63, T.64, L.84, A.85, A.86, V.88, M.108, C.127, L.128, Y.158, K.162, P.185, T.186, V.188, H.201, R.335 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:P.185, A:V.188 Hydrogen bonds: A:G.29, A:S.31, A:S.31, A:S.31, A:G.32, A:L.33, A:V.34, A:S.58, A:S.58, A:S.58, A:D.62, A:L.63, A:L.84, A:A.86, A:Y.158, A:Y.158, A:K.162, A:V.188, A:H.201 Salt bridges: A:R.335 NAP.2: 26 residues within 4Å: Chain B: G.29, G.30, S.31, G.32, L.33, V.34, S.57, S.58, A.61, D.62, L.63, T.64, L.84, A.85, A.86, V.88, M.108, C.127, L.128, Y.158, K.162, P.185, T.186, V.188, H.201, R.335 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:P.185, B:V.188 Hydrogen bonds: B:G.29, B:S.31, B:S.31, B:S.31, B:G.32, B:L.33, B:V.34, B:S.58, B:S.58, B:S.58, B:D.62, B:D.62, B:L.63, B:T.64, B:L.84, B:A.86, B:Y.158, B:K.162, B:V.188 Salt bridges: B:R.335

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain B: T.64, K.104 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vollmar, M. et al., Crystal Structure of Human Gdp-L-Fucose Synthase with Bound Nadp. To be Published

Release Date

2013-06-12

Peptides

GDP-L-FUCOSE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

GDP-L-FUCOSE SYNTHASE

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