- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 3 residues within 4Å:- Chain A: H.13, M.235
- Ligands: EDO.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.13
- Water bridges: A:M.235
EDO.5: 6 residues within 4Å:- Chain A: H.13, E.63, V.226, L.264
- Ligands: EDO.4, EDO.6
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.67
- Water bridges: A:E.60, A:L.264
EDO.6: 6 residues within 4Å:- Chain A: V.226, L.227, V.265, A.267, T.269
- Ligands: EDO.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.269
EDO.7: 7 residues within 4Å:- Chain A: H.6, H.9, N.12, A.14, D.15, W.195, M.235
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Y.4, A:H.9, A:N.12, A:D.15, A:D.15
- Water bridges: A:K.18
EDO.8: 4 residues within 4Å:- Chain A: R.201, E.223, H.271, T.273
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.201, A:T.273, A:T.273
- Water bridges: A:Q.221
EDO.9: 4 residues within 4Å:- Chain A: P.228, D.229, G.270, H.271
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.229, A:D.229, A:G.270
EDO.10: 4 residues within 4Å:- Chain A: R.128, F.131, Q.132, V.139
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.139
- Water bridges: A:R.128, A:V.139
EDO.11: 6 residues within 4Å:- Chain A: T.189, I.191, N.244, P.245, P.246
- Ligands: SO4.17
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:P.245
- Water bridges: A:T.189, A:T.189
EDO.12: 2 residues within 4Å:- Chain A: F.145, A.175
1 PLIP interactions:1 interactions with chain A- Water bridges: A:D.172
EDO.13: 3 residues within 4Å:- Chain A: S.3, Y.4, E.168
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.3
- Water bridges: A:R.5
EDO.14: 6 residues within 4Å:- Chain A: S.7, A.45, R.47, Y.48, Q.49, L.126
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.7, A:R.47, A:Q.49
EDO.15: 6 residues within 4Å:- Chain A: P.245, P.246, W.247, L.249, E.250, W.276
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:L.249, A:E.250, A:E.250
- Water bridges: A:Q.251
EDO.16: 5 residues within 4Å:- Chain A: K.149, A.150, K.151, L.152, P.153
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.153
- Water bridges: A:A.150
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.17: 4 residues within 4Å:- Chain A: L.29, K.32, R.158
- Ligands: EDO.11
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:K.32, A:R.158
SO4.18: 3 residues within 4Å:- Chain A: R.47, H.87, F.88
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.105
- Water bridges: A:H.87
- Salt bridges: A:R.47, A:H.87
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punekar, A.S. et al., Structural and Functional Insights Into the Molecular Mechanism of Rrna M6A Methyltransferase Rlmj. Nucleic Acids Res. (2013)
- Release Date
- 2013-08-21
- Peptides
- RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE J: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punekar, A.S. et al., Structural and Functional Insights Into the Molecular Mechanism of Rrna M6A Methyltransferase Rlmj. Nucleic Acids Res. (2013)
- Release Date
- 2013-08-21
- Peptides
- RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE J: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A