- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 6 residues within 4Å:- Chain A: R.201, I.204, K.205, I.208, Q.221
- Ligands: EDO.16
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.201
- Water bridges: A:R.201
EDO.4: 4 residues within 4Å:- Chain A: P.228, D.229, G.270, H.271
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.229, A:D.229, A:G.270, A:H.271
- Water bridges: A:R.201
EDO.5: 3 residues within 4Å:- Chain A: A.66, W.69
- Ligands: EDO.9
No protein-ligand interaction detected (PLIP)EDO.6: 7 residues within 4Å:- Chain A: F.145, P.165, P.166, D.172, A.175, V.176
- Ligands: PEG.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.172
EDO.7: 0 residues within 4Å:- (No contacts)
1 PLIP interactions:1 interactions with chain A- Water bridges: A:R.67
EDO.8: 1 residues within 4Å:- Chain A: R.158
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.158
EDO.9: 5 residues within 4Å:- Chain A: Y.61, L.62, A.66, L.94
- Ligands: EDO.5
No protein-ligand interaction detected (PLIP)EDO.10: 4 residues within 4Å:- Chain A: P.246, W.247, E.250, W.276
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.246
- Water bridges: A:L.249
EDO.11: 7 residues within 4Å:- Chain A: L.24, E.27, A.76, E.77, L.78, E.79, A.80
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.77, A:A.80
- Water bridges: A:E.27, A:E.27
EDO.12: 5 residues within 4Å:- Chain A: H.261, S.262, V.265, P.266, G.268
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.261, A:P.266
- Water bridges: A:S.262
EDO.13: 5 residues within 4Å:- Chain A: F.145, K.149, S.178, G.179, E.182
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:F.145
EDO.14: 2 residues within 4Å:- Chain A: A.181, T.214
No protein-ligand interaction detected (PLIP)EDO.15: 1 residues within 4Å:- Chain A: N.255
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.255
EDO.16: 5 residues within 4Å:- Chain A: I.208, E.212, Q.221, I.277
- Ligands: EDO.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.221, A:Q.221
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punekar, A.S. et al., Structural and Functional Insights Into the Molecular Mechanism of Rrna M6A Methyltransferase Rlmj. Nucleic Acids Res. (2013)
- Release Date
- 2013-08-21
- Peptides
- RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE J: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 14 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Punekar, A.S. et al., Structural and Functional Insights Into the Molecular Mechanism of Rrna M6A Methyltransferase Rlmj. Nucleic Acids Res. (2013)
- Release Date
- 2013-08-21
- Peptides
- RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE J: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B