SMTL ID : 4bm1.2 (1 other biounit)

CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.49, G.67, D.69, S.71, I.72 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.49, A:D.69, A:S.71, H2O.5, H2O.5 CA.2: 7 residues within 4Å: Chain A: S.177, D.194, T.196, P.197, D.199, D.201, Q.203 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.194, A:D.194, A:T.196, A:D.199, A:D.201

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 29 residues within 4Å: Chain A: H.40, E.41, L.43, R.44, T.46, F.47, P.146, E.147, P.148, I.155, M.159, V.169, L.172, L.173, S.175, H.176, V.178, A.179, A.180, Q.181, D.182, T.183, I.184, F.193, L.235, S.237, F.265, M.269, M.272 27 PLIP interactions: 27 interactions with chain A, Hydrophobic interactions: A:L.43, A:R.44, A:F.47, A:F.47, A:F.47, A:F.47, A:P.146, A:P.148, A:I.155, A:L.172, A:L.173, A:A.179, A:Q.181, A:I.184, A:F.193, A:F.193, A:L.235 Hydrogen bonds: A:H.40, A:A.180, A:D.182, A:T.183, A:T.183, A:I.184 Water bridges: A:R.44, A:D.182 Salt bridges: A:R.44 Metal complexes: A:H.176

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.321, P.323 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.321 Salt bridges: A:R.321 SO4.5: 5 residues within 4Å: Chain A: A.303, D.325, T.328, F.329, T.330 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.328, A:T.330, A:T.330 Water bridges: A:D.325 SO4.6: 2 residues within 4Å: Chain A: D.325, K.326 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.324, A:K.326 Salt bridges: A:K.326 SO4.7: 4 residues within 4Å: Chain A: A.303, G.304, T.328, F.329 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.329 Water bridges: A:A.303, A:G.304, A:G.304, A:G.304 SO4.8: 3 residues within 4Å: Chain A: N.12, I.283, D.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.12, A:D.284 Water bridges: A:D.284 SO4.9: 2 residues within 4Å: Chain A: R.126, E.287 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.126 SO4.10: 2 residues within 4Å: Chain A: G.327, T.328 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.328, A:T.328 Water bridges: A:T.330 SO4.11: 2 residues within 4Å: Chain A: K.62, F.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.63 Salt bridges: A:K.62 SO4.12: 2 residues within 4Å: Chain A: R.126, V.291 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.126, A:R.126 Salt bridges: A:R.126 SO4.13: 3 residues within 4Å: Chain A: R.293, G.294, R.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.293, A:R.295 Salt bridges: A:R.295 SO4.14: 3 residues within 4Å: Chain A: R.295, K.297, Q.298 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.298 Water bridges: A:R.295, A:R.295 Salt bridges: A:R.295

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.15: 6 residues within 4Å: Chain A: H.191, L.214, I.215, P.216, P.230, G.231 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.230 Hydrogen bonds: A:P.216, A:G.231 Water bridges: A:I.215, A:I.215, A:P.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez-Fueyo, E. et al., Ligninolytic Peroxidase Genes in the Oyster Mushroom Genome: Heterologous Expression, Molecular Structure, Catalytic and Stability Properties, and Lignin-Degrading Ability. Biotechnol.Biofuels (2014)

Release Date

2014-01-15

Peptides

MANGANESE PEROXIDASE 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

MANGANESE PEROXIDASE 4

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