SMTL ID : 4bm2.1

CRYSTAL STRUCTURE OF MANGANESE PEROXIDASE 4 FROM PLEUROTUS OSTREATUS - CRYSTAL FORM II

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.49, G.67, D.69, S.71 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.49, A:D.69, A:S.71, H2O.4, H2O.4 CA.2: 5 residues within 4Å: Chain A: S.177, D.194, T.196, D.199, D.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.194, A:D.194, A:T.196, A:D.199, A:D.201

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 23 residues within 4Å: Chain A: H.40, E.41, L.43, R.44, F.47, P.146, E.147, P.148, L.172, L.173, S.175, H.176, V.178, A.179, A.180, Q.181, D.182, T.183, I.184, F.193, L.235, S.237, M.269 25 PLIP interactions: 24 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.43, A:R.44, A:F.47, A:F.47, A:F.47, A:F.47, A:P.146, A:P.148, A:L.172, A:L.173, A:A.179, A:Q.181, A:I.184, A:F.193, A:F.193, A:L.235 Hydrogen bonds: A:H.40, A:A.180, A:D.182, A:T.183, A:I.184 Water bridges: A:D.182 Salt bridges: A:R.44 Metal complexes: A:H.176, H2O.4

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: N.12, I.283, D.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.12, A:D.284 Water bridges: A:S.11 SO4.5: 7 residues within 4Å: Chain A: D.185, K.187, L.188, G.217, D.218, S.219, H.221 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.218, A:S.219, A:S.219 Water bridges: A:K.187, A:G.217 Salt bridges: A:K.187, A:H.221 SO4.6: 3 residues within 4Å: Chain A: T.324, D.325, K.326 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.326 Water bridges: A:D.325, A:D.325 Salt bridges: A:K.326 SO4.7: 2 residues within 4Å: Chain A: G.327, T.328 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.328, A:T.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez-Fueyo, E. et al., Ligninolytic Peroxidase Genes in the Oyster Mushroom Genome: Heterologous Expression, Molecular Structure, Catalytic and Stability Properties, and Lignin-Degrading Ability. Biotechnol.Biofuels (2014)

Release Date

2014-01-15

Peptides

MANGANESE PEROXIDASE 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MANGANESE PEROXIDASE 4

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