SMTL ID : 4boy.1

Structure of GAPDH from Thermosynechococcus elongatus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 19 residues within 4Å: Chain A: G.25, F.26, G.27, R.28, I.29, N.52, D.53, T.54, R.98, A.116, T.117, G.118, F.120, T.140, A.141, C.171, T.201, N.334, Y.338 22 PLIP interactions: 21 interactions with chain A, 1 interactions with chain D Hydrophobic interactions: A:I.29, A:Y.338 Hydrogen bonds: A:F.26, A:F.26, A:R.28, A:I.29, A:N.52, A:D.53, A:T.54, A:R.98, A:R.98, A:N.334 Water bridges: A:N.24, A:G.27, A:G.30, A:R.31, A:G.118, A:T.140, A:G.202, A:G.202, A:E.335, D:S.210 NAD.2: 19 residues within 4Å: Chain B: G.25, F.26, G.27, R.28, I.29, N.52, D.53, T.54, R.98, A.116, T.117, G.118, F.120, T.140, A.141, C.171, T.201, N.334, Y.338 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:I.29, B:Y.338 Hydrogen bonds: B:F.26, B:F.26, B:R.28, B:I.29, B:N.52, B:D.53, B:T.54, B:R.98, B:R.98, B:N.334 Water bridges: B:N.24, B:N.24, B:G.27, B:G.30, B:R.31, B:G.118, B:T.140, B:G.202 NAD.3: 19 residues within 4Å: Chain C: G.25, F.26, G.27, R.28, I.29, N.52, D.53, T.54, R.98, A.116, T.117, G.118, F.120, T.140, A.141, C.171, T.201, N.334, Y.338 21 PLIP interactions: 20 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:I.29, C:Y.338 Hydrogen bonds: C:F.26, C:F.26, C:R.28, C:I.29, C:N.52, C:T.54, C:R.98, C:R.98, C:T.140, C:N.334 Water bridges: C:N.24, C:G.27, C:G.30, C:R.31, C:G.118, C:T.140, C:G.202, C:G.202, B:S.210 NAD.4: 19 residues within 4Å: Chain D: G.25, F.26, G.27, R.28, I.29, N.52, D.53, T.54, R.98, A.116, T.117, G.118, F.120, T.140, A.141, C.171, T.201, N.334, Y.338 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:I.29, D:Y.338 Hydrogen bonds: D:F.26, D:F.26, D:R.28, D:I.29, D:N.52, D:T.54, D:R.98, D:R.98, D:T.140, D:N.334 Water bridges: D:N.24, D:N.24, D:G.27, D:G.30, D:R.31, D:G.118, D:T.140, D:G.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cotton, C.A.R. et al., Structure of Gapdh. To be Published

Release Date

2014-06-11

Peptides

GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE

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