SMTL ID : 6ghr.1

cyanobacterial GAPDH with full-length CP12

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-4-2-mer

Ligands

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 23 residues within 4Å: Chain A: G.25, F.26, G.27, R.28, I.29, N.52, D.53, T.54, D.97, R.98, A.116, T.117, G.118, F.120, T.140, A.141, C.171, T.201, N.334, Y.338 Chain D: D.68, Y.75, D.76 26 PLIP interactions: 22 interactions with chain A, 1 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: A:I.29, A:Y.338 Hydrogen bonds: A:F.26, A:F.26, A:R.28, A:I.29, A:N.52, A:D.53, A:T.54, A:R.98, A:N.334, D:Y.75, D:D.76 Water bridges: A:N.24, A:N.24, A:G.27, A:G.30, A:R.31, A:R.31, A:G.118, A:T.140, A:G.202, A:E.335, A:E.335, B:S.210, D:I.74 NAD.2: 20 residues within 4Å: Chain A: S.210 Chain B: G.25, F.26, G.27, R.28, I.29, N.52, D.53, T.54, R.98, A.116, T.117, G.118, F.120, T.140, A.141, C.171, T.201, N.334, Y.338 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:I.29, B:Y.338 Hydrogen bonds: B:F.26, B:R.28, B:I.29, B:N.52, B:T.54, B:R.98, B:R.98, B:R.98, B:T.140, B:N.334 Water bridges: B:N.24, B:N.24, B:G.27, B:G.30, B:G.118, B:T.140, B:G.202, B:G.202, D:E.71, D:E.71 NAD.4: 20 residues within 4Å: Chain E: G.25, F.26, G.27, R.28, I.29, N.52, D.53, T.54, R.98, A.116, T.117, G.118, F.120, T.140, A.141, C.171, T.201, N.334, E.335, Y.338 18 PLIP interactions: 16 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:I.29, E:I.29, E:Y.338 Hydrogen bonds: E:F.26, E:R.28, E:I.29, E:N.52, E:T.54, E:T.54, E:R.98, E:N.334 Water bridges: E:G.27, E:G.30, E:G.118, E:T.140, E:G.202, F:S.210, F:S.210 NAD.5: 22 residues within 4Å: Chain C: D.68, Y.75 Chain F: G.25, F.26, G.27, R.28, I.29, N.52, D.53, T.54, D.97, R.98, A.116, T.117, G.118, F.120, T.140, A.141, C.171, T.201, N.334, Y.338 18 PLIP interactions: 16 interactions with chain F, 2 interactions with chain C Hydrophobic interactions: F:I.29, F:Y.338 Hydrogen bonds: F:F.26, F:R.28, F:I.29, F:N.52, F:D.53, F:T.54, F:R.98, F:T.140, F:N.334, C:D.68, C:D.76 Water bridges: F:N.24, F:G.27, F:G.30, F:G.118, F:T.140

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain B: S.170, C.171, T.172, H.198, T.229, G.230, R.252 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.170, B:S.170, B:C.171, B:T.172, B:T.172, B:G.230, B:R.252 Water bridges: B:R.252 Salt bridges: B:H.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McFarlane, C.R. et al., Structural basis of light-induced redox regulation in the Calvin-Benson cycle in cyanobacteria. Proc.Natl.Acad.Sci.USA (2019)

Release Date

2019-05-08

Peptides

Glyceraldehyde-3-phosphate dehydrogenase: ABEF
CP12 polypeptide: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

E
D

F
A

C
E

D
F

Glyceraldehyde-3-phosphate dehydrogenase

CP12 polypeptide

Related Entries With Identical Sequence