SMTL ID : 4bpj.1

Mcl-1 bound to alpha beta Puma BH3 peptide 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-2-mer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: C.121, E.123, P.124 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.121, H2O.1 ZN.2: 3 residues within 4Å: Chain A: H.87 Chain B: R.7 Chain C: D.139 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:H.87, C:D.139, C:D.139, H2O.2, H2O.4 ZN.3: 1 residues within 4Å: Chain A: H.59 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.59, H2O.1, H2O.2, H2O.4 ZN.4: 1 residues within 4Å: Chain A: E.15 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.15, A:E.15, H2O.4, H2O.4 ZN.5: 3 residues within 4Å: Chain A: D.71, E.75, H.112 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.71, A:H.112, H2O.4 ZN.10: 3 residues within 4Å: Chain C: C.121, E.123, P.124 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.121, H2O.5 ZN.11: 3 residues within 4Å: Chain A: D.139 Chain C: H.87 Chain D: R.7 5 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: A:D.139, A:D.139, C:H.87, H2O.7, H2O.8 ZN.12: 1 residues within 4Å: Chain C: H.59 4 PLIP interactions: 1 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:H.59, H2O.6, H2O.7, H2O.8 ZN.13: 1 residues within 4Å: Chain C: E.15 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.15, C:E.15, H2O.8, H2O.9 ZN.14: 3 residues within 4Å: Chain C: D.71, E.75, H.112 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.71, C:H.112, H2O.9

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain A: H.87 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: T.136 Chain C: T.136 Ligands: CL.16 Ligand excluded by PLIP CL.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.15: 1 residues within 4Å: Chain C: H.87 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain A: T.136 Chain C: T.136 Ligands: CL.7 Ligand excluded by PLIP CL.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, B.J. et al., Structure-Guided Rational Design of Alpha/Beta-Peptide Foldamers with High Affinity for Bcl-2 Family Prosurvival Proteins. Chembiochem (2013)

Release Date

2014-04-09

Peptides

FUSION PROTEIN CONSISTING OF INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG: AC
ALPHA BETA BH3-PEPTIDE: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
D

D
D

FUSION PROTEIN CONSISTING OF INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG

ALPHA BETA BH3-PEPTIDE

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