SMTL ID : 4bso.1

Crystal structure of R-spondin 1 (Fu1Fu2) - Native

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: F.56, A.58, C.77, F.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.77 EDO.2: 8 residues within 4Å: Chain A: K.27, C.28, S.29, P.30, L.32, I.34, M.63, N.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.28, A:P.30, A:L.32, A:N.64 EDO.3: 5 residues within 4Å: Chain A: F.56, C.69, C.74, E.75 Ligands: EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.75 EDO.4: 2 residues within 4Å: Chain A: I.71 Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain A: K.65, S.79, H.80 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.80

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: P.53, G.54 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: K.85, C.86 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, W.C. et al., Structure of Stem Cell Growth Factor R-Spondin 1 in Complex with the Ectodomain of its Receptor Lgr5. Cell Rep. (2013)

Release Date

2013-06-19

Peptides

R-SPONDIN-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

R-SPONDIN-1

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