SMTL ID : 4bsq.1

MOUSE CATHEPSIN S WITH COVALENT LIGAND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x QQV: (1R,2R,4R)-N-(2-azanylideneethyl)-2-morpholin-4-ylcarbonyl-4-(phenylsulfonyl)cyclopentane-1-carboxamide(Covalent)

QQV.1: 18 residues within 4Å: Chain A: Q.26, G.30, A.31, C.32, W.33, G.70, K.72, G.75, G.76, G.77, Y.78, M.79, G.145, V.170, N.171, H.172, G.173, Y.219 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.78, A:V.170 Hydrogen bonds: A:Q.26, A:C.32, A:G.77, A:N.171 pi-Stacking: A:Y.78, A:Y.219

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.133, R.208, N.209 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.209 Water bridges: A:K.133, A:K.133, A:R.208 Salt bridges: A:K.133, A:R.208 SO4.3: 2 residues within 4Å: Chain A: E.66, E.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.67 SO4.4: 1 residues within 4Å: Chain A: K.72 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.72 SO4.5: 2 residues within 4Å: Chain A: Q.84, I.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.84 Water bridges: A:D.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilpert, H. et al., Identification of Potent and Selective Cathepsin S (Cats) Inhibitors Containing Different Central Cyclic Scaffolds. J.Med.Chem. (2013)

Release Date

2013-11-27

Peptides

CATHEPSIN S: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CATHEPSIN S

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