SMTL ID : 4bu1.2 (1 other biounit)

Crystal structure of Rad4 BRCT1,2 in complex with a Crb2 phosphopeptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: C.14, T.15, S.16, R.22, K.56 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.15, A:T.15, A:T.15, A:S.16 Water bridges: A:T.15, A:R.22 Salt bridges: A:R.22, A:K.56

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: S.71, S.72, L.99, P.100, F.103 4 PLIP interactions: 4 interactions with chain A Water bridges: A:S.72, A:S.72, A:S.72, A:S.72

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 8 residues within 4Å: Chain A: R.137, R.150, Y.154, W.158 Chain B: G.1, Y.2, G.3, R.4 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.137, A:R.150, B:G.3 Water bridges: A:Y.154, A:W.158, B:G.1, B:G.1

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: T.140, K.159, I.160, N.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.159, A:N.161 EDO.5: 4 residues within 4Å: Chain A: N.111, I.112, G.113, E.116 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.113 EDO.6: 3 residues within 4Å: Chain B: E.6, S.7, P.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.6, B:E.6, B:S.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qu, M. et al., Phosphorylation-Dependent Assembly and Coordination of the DNA Damage Checkpoint Apparatus by Rad4(Topbp1.). Mol.Cell (2013)

Release Date

2013-10-09

Peptides

S-M CHECKPOINT CONTROL PROTEIN RAD4: A
DNA REPAIR PROTEIN RHP9: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

S-M CHECKPOINT CONTROL PROTEIN RAD4

DNA REPAIR PROTEIN RHP9

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