SMTL ID : 6hm3.1

Crystal structure of Rad4 BRCT1,2 in complex with a Sld3 phosphopeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

hetero-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: T.140, K.159, I.160, N.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.161, A:N.161 Water bridges: A:N.161 GOL.2: 5 residues within 4Å: Chain A: E.121, L.125, T.130, F.131, P.133 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.121, A:F.131

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: A.49, S.71, S.72, L.99 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:A.49, H2O.6 CA.4: 3 residues within 4Å: Chain A: E.166, W.169, Q.170 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Day, M. et al., BRCT domains of the DNA damage checkpoint proteins TOPBP1/Rad4 display distinct specificities for phosphopeptide ligands. Elife (2018)

Release Date

2018-10-17

Peptides

S-M checkpoint control protein rad4: A
DNA replication regulator sld3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S-M checkpoint control protein rad4

DNA replication regulator sld3

Related Entries With Identical Sequence