SMTL ID : 4buj.1 (1 other biounit)

Crystal structure of the S. cerevisiae Ski2-3-8 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-2-mer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: H.356, T.357, S.358, A.359, G.360, K.361, T.362 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.356, A:S.358, A:A.359, A:G.360, A:K.361, A:T.362 SO4.2: 3 residues within 4Å: Chain A: S.639, K.640, K.641 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.640, A:K.641 SO4.3: 4 residues within 4Å: Chain A: H.700, G.701, T.726, T.728 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.701, A:T.726, A:T.728, A:T.728 SO4.4: 2 residues within 4Å: Chain A: K.708, R.997 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.708, A:R.997 SO4.5: 2 residues within 4Å: Chain B: K.1361, R.1380 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.1361, B:R.1380 SO4.6: 4 residues within 4Å: Chain C: K.240, L.297, S.298, K.361 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.240, C:K.361 SO4.7: 5 residues within 4Å: Chain B: F.1420, L.1421 Chain C: W.125, T.190, R.237 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:F.1420, C:R.237 Salt bridges: C:R.237 SO4.8: 3 residues within 4Å: Chain C: L.94, K.111, K.120 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.111, C:K.120 SO4.9: 4 residues within 4Å: Chain A: R.1027 Chain C: H.279, S.291, R.316 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.291, C:S.291, C:R.316 Salt bridges: C:K.314, A:R.1027 SO4.10: 4 residues within 4Å: Chain D: K.128, K.240, S.298, K.361 3 PLIP interactions: 3 interactions with chain D Salt bridges: D:K.128, D:K.240, D:K.361 SO4.11: 5 residues within 4Å: Chain B: Y.1369 Chain D: H.67, W.125, T.190, R.237 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:H.67 Salt bridges: D:R.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halbach, F. et al., The Yeast Ski Complex: Crystal Structure and RNA Channeling to the Exosome Complex. Cell(Cambridge,Mass.) (2013)

Release Date

2013-08-28

Peptides

ANTIVIRAL HELICASE SKI2: A
SUPERKILLER PROTEIN 3: B
ANTIVIRAL PROTEIN SKI8: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ANTIVIRAL HELICASE SKI2

SUPERKILLER PROTEIN 3

ANTIVIRAL PROTEIN SKI8

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