SMTL ID : 4buj.2 (1 other biounit)

Crystal structure of the S. cerevisiae Ski2-3-8 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-2-mer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: S.358, A.359, G.360, K.361, T.362 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.358, A:A.359, A:G.360, A:K.361, A:T.362 SO4.2: 1 residues within 4Å: Chain A: S.639 No protein-ligand interaction detected (PLIP) SO4.3: 3 residues within 4Å: Chain A: G.701, T.726, T.728 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.701, A:T.728 SO4.4: 3 residues within 4Å: Chain C: K.128, K.240, K.361 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.240, C:K.361 SO4.5: 6 residues within 4Å: Chain B: F.1420, L.1421 Chain C: W.125, T.190, I.236, R.237 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:I.236, B:F.1420 Salt bridges: C:R.237 SO4.6: 4 residues within 4Å: Chain C: D.92, L.94, K.111, K.120 2 PLIP interactions: 2 interactions with chain C Salt bridges: C:K.111, C:K.120 SO4.7: 4 residues within 4Å: Chain C: H.279, S.291, K.314, R.316 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:H.279, C:R.316 Salt bridges: C:K.314 SO4.8: 3 residues within 4Å: Chain D: K.128, K.240, S.298 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:K.128, D:K.240 SO4.9: 3 residues within 4Å: Chain D: R.270, G.272, S.273 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.273 Salt bridges: D:R.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halbach, F. et al., The Yeast Ski Complex: Crystal Structure and RNA Channeling to the Exosome Complex. Cell(Cambridge,Mass.) (2013)

Release Date

2013-08-28

Peptides

ANTIVIRAL HELICASE SKI2: A
SUPERKILLER PROTEIN 3: B
ANTIVIRAL PROTEIN SKI8: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

ANTIVIRAL HELICASE SKI2

SUPERKILLER PROTEIN 3

ANTIVIRAL PROTEIN SKI8

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