SMTL ID : 4bv9.1

Crystal structure of the NADPH form of mouse Mu-crystallin.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 24 residues within 4Å: Chain A: S.112, H.113, T.137, R.140, T.141, G.164, A.165, G.166, V.167, Q.168, N.189, R.190, T.191, N.194, V.225, T.226, M.227, A.228, V.247, G.248, S.313, L.314, G.315 Ligands: PYR.2 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:T.137, A:T.141, A:V.247 Hydrogen bonds: A:S.112, A:H.113, A:R.140, A:A.165, A:G.166, A:V.167, A:Q.168, A:N.189, A:N.189, A:R.190, A:T.191, A:T.226, A:M.227, A:V.247 Water bridges: A:S.112, A:S.112, A:H.113, A:Q.168, A:A.169, A:R.190, A:R.190, A:T.229, A:T.229, A:T.229, A:S.250, A:S.313, A:S.313 Salt bridges: A:H.113, A:R.190 pi-Cation interactions: A:R.190 NDP.3: 24 residues within 4Å: Chain B: S.112, H.113, T.137, R.140, T.141, G.164, A.165, G.166, V.167, Q.168, N.189, R.190, T.191, N.194, V.225, T.226, M.227, A.228, V.247, G.248, S.250, S.313, L.314, G.315 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:T.137, B:T.141 Hydrogen bonds: B:S.112, B:H.113, B:R.140, B:A.165, B:V.167, B:Q.168, B:N.189, B:N.189, B:R.190, B:T.191, B:T.191, B:N.194, B:T.226, B:M.227, B:V.247, B:S.250 Water bridges: B:H.113, B:H.113, B:G.166, B:A.169, B:R.190, B:R.190 Salt bridges: B:H.113, B:H.113, B:R.190 pi-Cation interactions: B:R.190

1 x PYR: PYRUVIC ACID(Non-covalent)

PYR.2: 10 residues within 4Å: Chain A: R.69, M.84, K.97, V.99, H.113, T.137, R.140, L.314, G.315 Ligands: NDP.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.99 Hydrogen bonds: A:R.69, A:L.314 Water bridges: A:S.250 Salt bridges: A:R.69, A:K.97, A:R.140

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 4 residues within 4Å: Chain B: S.211, V.212, Q.213, W.237 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.212, B:Q.213

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain B: D.92, F.120, P.122, K.325 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.120, B:K.325, B:K.325

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borel, F. et al., Crystal Structure of Mouse Mu-Crystallin Complexed with Nadph and the T3 Thyroid Hormone. FEBS J. (2014)

Release Date

2014-02-05

Peptides

THIOMORPHOLINE-CARBOXYLATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

THIOMORPHOLINE-CARBOXYLATE DEHYDROGENASE

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