SMTL ID : 4bzw.1

Complete crystal structure of the carboxylesterase Cest-2923 (lp_2923) from Lactobacillus plantarum WCFS1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.42, G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: K.244, K.247, K.249, Y.250 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: R.109, A.273 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: S.167, R.170, N.171 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: Q.183, R.184, K.211 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain B: G.42, G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain B: T.200, D.201, E.202, S.203, I.232, H.233 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain B: K.244, K.247, K.249, Y.250 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain B: S.167, R.170, N.171, W.180 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain C: G.42, G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain C: K.244, K.247, K.249, Y.250 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain C: R.109, A.273 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain C: S.167, R.170, N.171 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain C: Q.183, R.184, K.211 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain D: G.42, G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP SO4.20: 6 residues within 4Å: Chain D: T.200, D.201, E.202, S.203, I.232, H.233 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain D: K.244, K.247, K.249, Y.250 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain D: S.167, R.170, N.171, W.180 Ligand excluded by PLIP

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.10: 2 residues within 4Å: Chain B: R.137, R.178 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.137, B:R.178 ACT.11: 2 residues within 4Å: Chain B: R.109, A.273 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.109, B:G.274 Salt bridges: B:R.109 ACT.12: 3 residues within 4Å: Chain B: Q.183, R.184, K.211 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.211 Hydrogen bonds: B:Q.183 Salt bridges: B:R.184, B:K.211 ACT.23: 2 residues within 4Å: Chain D: R.137, R.178 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.137, D:R.178 ACT.24: 2 residues within 4Å: Chain D: R.109, A.273 3 PLIP interactions: 3 interactions with chain D Water bridges: D:R.109, D:G.274 Salt bridges: D:R.109 ACT.25: 3 residues within 4Å: Chain D: Q.183, R.184, K.211 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:K.211 Hydrogen bonds: D:Q.183 Salt bridges: D:R.184, D:K.211

2 x 144: TRIS-HYDROXYMETHYL-METHYL-AMMONIUM(Non-covalent)

144.13: 2 residues within 4Å: Chain B: Q.5, E.53 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.53, B:N.71 144.26: 2 residues within 4Å: Chain D: Q.5, E.53 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.53, D:N.71 Water bridges: D:E.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benavente, R. et al., Structure, Biochemical Characterization and Analysis of the Pleomorphism of Carboxylesterase Cest-2923 from Lactobacillus Plantarum Wcfs1. FEBS J. (2013)

Release Date

2013-10-30

Peptides

LIPASE/ESTERASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

LIPASE/ESTERASE

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