SMTL ID : 4bzz.1

Complete crystal structure of carboxylesterase Cest-2923 from Lactobacillus plantarum WCFS1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-hexamer

Ligands

18 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP ACT.2: 2 residues within 4Å: Chain A: R.109, A.273 Ligand excluded by PLIP ACT.3: 4 residues within 4Å: Chain A: R.59, A.63, L.263 Chain F: N.239 Ligand excluded by PLIP ACT.9: 5 residues within 4Å: Chain B: G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP ACT.10: 2 residues within 4Å: Chain B: R.109, A.273 Ligand excluded by PLIP ACT.11: 4 residues within 4Å: Chain B: R.59, A.63, L.263 Chain E: N.239 Ligand excluded by PLIP ACT.17: 5 residues within 4Å: Chain C: G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP ACT.18: 2 residues within 4Å: Chain C: R.109, A.273 Ligand excluded by PLIP ACT.19: 4 residues within 4Å: Chain C: R.59, A.63, L.263 Chain D: N.239 Ligand excluded by PLIP ACT.25: 5 residues within 4Å: Chain D: G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP ACT.26: 2 residues within 4Å: Chain D: R.109, A.273 Ligand excluded by PLIP ACT.27: 4 residues within 4Å: Chain C: N.239 Chain D: R.59, A.63, L.263 Ligand excluded by PLIP ACT.33: 5 residues within 4Å: Chain E: G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP ACT.34: 2 residues within 4Å: Chain E: R.109, A.273 Ligand excluded by PLIP ACT.35: 4 residues within 4Å: Chain B: N.239 Chain E: R.59, A.63, L.263 Ligand excluded by PLIP ACT.41: 5 residues within 4Å: Chain F: G.43, G.44, S.116, A.117, H.233 Ligand excluded by PLIP ACT.42: 2 residues within 4Å: Chain F: R.109, A.273 Ligand excluded by PLIP ACT.43: 4 residues within 4Å: Chain A: N.239 Chain F: R.59, A.63, L.263 Ligand excluded by PLIP

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 6 residues within 4Å: Chain A: T.200, D.201, E.202, S.203, I.232, H.233 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: R.6, Q.99 Chain C: Q.5, Q.16 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: K.244, K.247, K.249, Y.250 Chain F: E.29 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: S.167, R.170, N.171, W.180 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain B: T.200, D.201, E.202, S.203, I.232, H.233 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain A: Q.5, Q.16 Chain B: R.6, Q.99 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain B: K.244, K.247, K.249, Y.250 Chain E: E.29 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain B: S.167, R.170, N.171, W.180 Ligand excluded by PLIP SO4.20: 6 residues within 4Å: Chain C: T.200, D.201, E.202, S.203, I.232, H.233 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain B: Q.5, Q.16 Chain C: R.6, Q.99 Ligand excluded by PLIP SO4.22: 5 residues within 4Å: Chain C: K.244, K.247, K.249, Y.250 Chain D: E.29 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain C: S.167, R.170, N.171, W.180 Ligand excluded by PLIP SO4.28: 6 residues within 4Å: Chain D: T.200, D.201, E.202, S.203, I.232, H.233 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain D: R.6, Q.99 Chain F: Q.5, Q.16 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain C: E.29 Chain D: K.244, K.247, K.249, Y.250 Ligand excluded by PLIP SO4.31: 4 residues within 4Å: Chain D: S.167, R.170, N.171, W.180 Ligand excluded by PLIP SO4.36: 6 residues within 4Å: Chain E: T.200, D.201, E.202, S.203, I.232, H.233 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain D: Q.5, Q.16 Chain E: R.6, Q.99 Ligand excluded by PLIP SO4.38: 5 residues within 4Å: Chain B: E.29 Chain E: K.244, K.247, K.249, Y.250 Ligand excluded by PLIP SO4.39: 4 residues within 4Å: Chain E: S.167, R.170, N.171, W.180 Ligand excluded by PLIP SO4.44: 6 residues within 4Å: Chain F: T.200, D.201, E.202, S.203, I.232, H.233 Ligand excluded by PLIP SO4.45: 4 residues within 4Å: Chain E: Q.5, Q.16 Chain F: R.6, Q.99 Ligand excluded by PLIP SO4.46: 5 residues within 4Å: Chain A: E.29 Chain F: K.244, K.247, K.249, Y.250 Ligand excluded by PLIP SO4.47: 4 residues within 4Å: Chain F: S.167, R.170, N.171, W.180 Ligand excluded by PLIP

6 x CCN: ACETONITRILE(Non-functional Binders)

CCN.8: 3 residues within 4Å: Chain A: K.247, D.248, K.249 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.247, A:K.249 Hydrogen bonds: A:D.248, A:K.249 CCN.16: 3 residues within 4Å: Chain B: K.247, D.248, K.249 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.247, B:K.249 Hydrogen bonds: B:D.248, B:K.249 CCN.24: 3 residues within 4Å: Chain C: K.247, D.248, K.249 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:K.247, C:K.249 Hydrogen bonds: C:D.248, C:K.249 CCN.32: 3 residues within 4Å: Chain D: K.247, D.248, K.249 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:K.247, D:K.249 Hydrogen bonds: D:D.248, D:K.249 CCN.40: 3 residues within 4Å: Chain E: K.247, D.248, K.249 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:K.247, E:K.249 Hydrogen bonds: E:D.248, E:K.249 CCN.48: 3 residues within 4Å: Chain F: K.247, D.248, K.249 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:K.247, F:K.249 Hydrogen bonds: F:D.248, F:K.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benavente, R. et al., Structure, Biochemical Characterization and Analysis of the Pleomorphism of Carboxylesterase Cest-2923 from Lactobacillus Plantarum Wcfs1. FEBS J. (2013)

Release Date

2013-10-30

Peptides

LIPASE/ESTERASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

LIPASE/ESTERASE

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