SMTL ID : 4c1q.1 (1 other biounit)

Crystal structure of the PRDM9 SET domain in complex with H3K4me2 and AdoHcy.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: I.60, A.63, G.64, L.65, G.97, Y.98, R.124, Y.125, V.126, N.127, C.128, R.130, Y.164, Y.168, L.172 Chain B: R.2, K.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:L.65, A:L.65, A:L.65, A:Y.98, A:R.124, A:N.127, A:C.128, A:C.128, A:Y.168, A:Y.168

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.12, C.15, C.23, H.26 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.12, A:C.15, A:C.23, A:H.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Molecular Basis for the Regulation of the H3K4 Methyltransferase Activity of Prdm9. Cell Rep. (2013)

Release Date

2013-10-16

Peptides

HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9: A
HISTONE H3.1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9

HISTONE H3.1

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