SMTL ID : 4c1q.2 (1 other biounit)

Crystal structure of the PRDM9 SET domain in complex with H3K4me2 and AdoHcy.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.12, C.15, C.23, H.26 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.12, A:C.15, A:C.23, A:H.26

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.83, G.97, Y.98, S.99, W.100, V.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.98, A:S.99, A:V.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, H. et al., Molecular Basis for the Regulation of the H3K4 Methyltransferase Activity of Prdm9. Cell Rep. (2013)

Release Date

2013-10-16

Peptides

HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

HISTONE-LYSINE N-METHYLTRANSFERASE PRDM9

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