SMTL ID : 4c2j.2 (1 other biounit)

Crystal structure of human mitochondrial 3-ketoacyl-CoA thiolase in complex with CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: N.151, F.154 Chain B: K.45, D.46, S.143, Q.144 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.151 Water bridges: A:N.151, A:F.154, B:S.143 EDO.2: 6 residues within 4Å: Chain A: M.21, L.23, G.301, Y.302, K.326 Chain B: E.130 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.302, A:Y.302, A:K.326, B:E.130 EDO.3: 2 residues within 4Å: Chain A: V.190, K.260 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.260 Water bridges: A:K.260 EDO.4: 5 residues within 4Å: Chain A: W.169, L.172, T.173, P.180, F.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.173, A:M.181 EDO.5: 4 residues within 4Å: Chain A: F.47, F.55, I.226, E.227 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.227 EDO.7: 5 residues within 4Å: Chain A: K.45, D.46, Q.144 Chain B: N.151, F.154 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.151, B:N.151 Water bridges: B:F.154 EDO.8: 5 residues within 4Å: Chain B: W.169, L.172, T.173, P.180, F.259 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.173, B:M.181 Water bridges: B:L.172 EDO.9: 6 residues within 4Å: Chain A: E.130 Chain B: M.21, L.23, G.301, Y.302, K.326 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.302, B:K.326, A:E.130 Water bridges: B:V.300

2 x COA: COENZYME A(Non-covalent)

COA.6: 17 residues within 4Å: Chain A: C.112, W.169, L.172, M.181, R.244, T.247, Q.251, L.252, L.255, A.267, G.268, S.271, M.312, A.342, F.343, H.372, L.374 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.169 Hydrogen bonds: A:Q.207, A:R.244, A:R.244, A:T.247, A:S.271, A:S.271 Water bridges: A:A.182, A:A.267, A:V.273 pi-Cation interactions: A:R.244, A:R.244 COA.10: 17 residues within 4Å: Chain B: C.112, W.169, L.172, M.181, R.244, T.247, Q.251, L.252, L.255, A.267, G.268, S.271, M.312, A.342, F.343, H.372, L.374 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.169 Hydrogen bonds: B:Q.207, B:R.244, B:R.244, B:T.247, B:S.271, B:S.271, B:V.273 pi-Cation interactions: B:R.244, B:R.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kiema, T.-R. et al., The Crystal Structure of Human Mitochondrial 3-Ketoacyl-Coa Thiolase (T1): Insight Into the Reaction Mechanism of its Thiolase and Thioesterase Activities. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-09-03

Peptides

3-KETOACYL-COA THIOLASE, MITOCHONDRIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-KETOACYL-COA THIOLASE, MITOCHONDRIAL

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