SMTL ID : 4c2k.1 (1 other biounit)

Crystal structure of human mitochondrial 3-ketoacyl-CoA thiolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: W.169, L.172, T.173, P.180, F.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.181 Water bridges: A:L.172 EDO.2: 7 residues within 4Å: Chain A: L.331, M.334, V.337, L.356, D.357, K.360, T.361 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.334, A:D.357 EDO.3: 4 residues within 4Å: Chain A: F.47, F.55, I.226, E.227 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.227 EDO.6: 5 residues within 4Å: Chain B: W.169, L.172, T.173, P.180, F.259 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.172, B:T.173 Water bridges: B:A.182 EDO.7: 6 residues within 4Å: Chain B: L.331, M.334, V.337, L.356, D.357, K.360 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.334, B:D.357 EDO.8: 6 residues within 4Å: Chain A: E.130 Chain B: M.21, L.23, G.301, Y.302, K.326 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.302, B:K.326 EDO.9: 4 residues within 4Å: Chain A: K.45, Q.144 Chain B: N.151, F.154 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:K.45, A:Q.144, B:N.151 Water bridges: B:N.151, B:N.151 EDO.10: 6 residues within 4Å: Chain A: N.151, F.154 Chain B: K.45, D.46, S.143, Q.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.151

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.4: 2 residues within 4Å: Chain A: R.391, R.392 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.391, A:R.392

3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.5: 3 residues within 4Å: Chain A: Y.40, G.272, V.273 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.273 MES.11: 3 residues within 4Å: Chain B: Y.40, G.272, V.273 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.273 Water bridges: B:Y.40 MES.12: 3 residues within 4Å: Chain B: T.156, K.157, L.158 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.158 Salt bridges: B:K.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kiema, T.-R. et al., The Crystal Structure of Human Mitochondrial 3-Ketoacyl-Coa Thiolase (T1): Insight Into the Reaction Mechanism of its Thiolase and Thioesterase Activities. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-09-03

Peptides

3-KETOACYL-COA THIOLASE, MITOCHONDRIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-KETOACYL-COA THIOLASE, MITOCHONDRIAL

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