SMTL ID : 4c57.1 (1 other biounit)

Structure of GAK kinase in complex with a nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.146, R.153 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.146, A:R.153

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: R.292, L.293, E.297 No protein-ligand interaction detected (PLIP) EDO.3: 3 residues within 4Å: Chain A: Q.73, C.76, F.77 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.80 EDO.4: 7 residues within 4Å: Chain A: R.33, L.35, L.114, C.115, K.116 Chain B: R.99, I.108 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.33, B:R.99, B:R.99 Water bridges: A:C.115 EDO.5: 6 residues within 4Å: Chain A: D.162, S.183, R.209, N.210, T.211, T.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.183, A:S.183, A:T.211, A:T.212

1 x FEF: (2Z,3E)-2,3'-BIINDOLE-2',3(1H,1'H)-DIONE 3-{O-[(3R)-3,4-DIHYDROXYBUTYL]OXIME}

FEF.6: 18 residues within 4Å: Chain A: L.35, A.36, V.43, A.56, K.58, L.110, T.112, E.113, L.114, C.115, K.116, G.117, Q.118, E.166, N.167, L.169, C.179, D.180 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.35, A:L.110, A:T.112, A:L.169 Hydrogen bonds: A:C.115, A:C.115, A:N.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Structure of Cyclin G-Associated Kinase (Gak) Trapped in Different Conformations Using Nanobodies. Biochem.J. (2014)

Release Date

2013-10-09

Peptides

Cyclin-G-associated kinase: A
NANOBODY: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Cyclin-G-associated kinase

NANOBODY

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