SMTL ID : 4c58.1 (1 other biounit)

Structure of GAK kinase in complex with nanobody (NbGAK_4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: P.156, I.187, S.188, H.189, Y.190 Chain B: S.188, H.189 Ligands: EDO.4 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.190, A:Y.190, B:H.189 EDO.2: 4 residues within 4Å: Chain A: G.19, Q.20, T.21, R.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.21 EDO.4: 8 residues within 4Å: Chain A: S.188, H.189 Chain B: P.156, I.187, S.188, H.189, Y.190 Ligands: EDO.1 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.190, B:Y.190, A:H.189 EDO.5: 4 residues within 4Å: Chain B: G.19, Q.20, T.21, R.30 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.21

2 x 824: 9-HYDROXY-4-PHENYLPYRROLO[3,4-C]CARBAZOLE-1,3(2H,6H)-DIONE(Non-covalent)

824.3: 16 residues within 4Å: Chain A: L.35, A.36, V.43, A.56, K.58, E.74, M.78, V.88, T.112, E.113, L.114, C.115, G.117, Q.118, L.169, C.179 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.35, A:L.35, A:V.43, A:A.56, A:K.58, A:Q.118, A:L.169, A:L.169 Hydrogen bonds: A:T.112, A:E.113, A:C.115 Water bridges: A:Q.118 824.6: 16 residues within 4Å: Chain B: L.35, A.36, V.43, A.56, K.58, E.74, M.78, V.88, T.112, E.113, L.114, C.115, G.117, Q.118, L.169, C.179 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:L.35, B:L.35, B:V.43, B:A.56, B:K.58, B:Q.118, B:L.169, B:L.169 Hydrogen bonds: B:T.112, B:E.113, B:C.115 Water bridges: B:Q.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chaikuad, A. et al., Structure of cyclin G-associated kinase (GAK) trapped in different conformations using nanobodies. Biochem. J. (2014)

Release Date

2013-10-09

Peptides

Cyclin-G-associated kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cyclin-G-associated kinase

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