SMTL ID : 4c5j.1 (1 other biounit)

Structure of the pyridoxal kinase from Staphylococcus aureus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: H.210, G.211, A.212, G.213, C.214 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.210, A:G.211, A:A.212, A:G.213, A:C.214 Water bridges: A:G.213 SO4.2: 3 residues within 4Å: Chain A: Y.223, K.228, Y.263 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.223 Water bridges: A:K.228, A:K.228, A:S.236, A:Y.263, A:Y.263 Salt bridges: A:K.228 SO4.3: 4 residues within 4Å: Chain A: K.5, I.71, G.72, N.98 7 PLIP interactions: 7 interactions with chain A Water bridges: A:K.5, A:K.5, A:D.74, A:N.98, A:N.98, A:N.98 Salt bridges: A:K.5 SO4.4: 5 residues within 4Å: Chain B: H.210, G.211, A.212, G.213, C.214 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.210, B:G.211, B:G.211, B:A.212, B:G.213, B:C.214 SO4.5: 5 residues within 4Å: Chain B: L.69, R.89, E.92, V.93, A.96 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.89 SO4.6: 2 residues within 4Å: Chain B: G.72, N.98 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:I.71, B:N.98 Water bridges: B:K.5, B:N.98, B:N.98 Salt bridges: B:K.5 SO4.7: 3 residues within 4Å: Chain B: G.178, K.179, A.180 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.179, B:A.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nodwell, M.B. et al., A Subfamily of Bacterial Ribokinases Utilizes a Hemithioacetal for Pyridoxal Phosphate Salvage. J.Am.Chem.Soc. (2014)

Release Date

2014-03-19

Peptides

PHOSPHOMETHYLPYRIMIDINE KINASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

PHOSPHOMETHYLPYRIMIDINE KINASE

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