SMTL ID : 4c7b.1

Complex of human Sirt3 with Bromo-Resveratrol and Fluor-De-Lys peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ARG- HIS- LYS- FDL: PEPTIDE(Non-covalent)

ARG-HIS-LYS-FDL.1: 13 residues within 4Å: Chain A: F.64, H.132, I.175, V.176, F.177, F.178, G.179, E.180, P.181, L.182, P.210 Ligands: GOL.5, GOL.6 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.64, A:I.175, A:F.178, A:L.182 Hydrogen bonds: A:V.176, A:G.179, A:E.180, A:L.182 pi-Stacking: A:F.178

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.140, C.143, C.164, C.167 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.140, A:C.143, A:C.164, A:C.167

1 x BVB: 5-[(E)-2-(4-bromophenyl)ethenyl]benzene-1,3-diol(Non-covalent)

BVB.3: 11 residues within 4Å: Chain A: A.30, F.41, L.57, P.60, I.63, F.64, L.79, Q.112, N.113, I.114, D.115 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.63, A:F.64, A:L.79, A:N.113, A:I.114 Hydrogen bonds: A:N.113, A:I.114, A:D.115, A:D.115 Water bridges: A:A.30 pi-Stacking: A:F.41

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.4: 3 residues within 4Å: Chain A: Q.184, R.185, L.188 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.188

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: E.61, E.65, F.178 Ligands: ARG-HIS-LYS-FDL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.65 GOL.6: 6 residues within 4Å: Chain A: P.181, L.182, P.183, Q.184, F.186 Ligands: ARG-HIS-LYS-FDL.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.182, A:Q.184 GOL.7: 7 residues within 4Å: Chain A: T.139, K.172, P.173, D.174, I.175, V.176, E.180 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.139, A:T.139, A:E.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, G.T.T. et al., Crystal Structures of Sirt3 Complexes with 4'-Bromo-Resveratrol Reveal Binding Sites and Inhibition Mechanism. Chem.Biol. (2013)

Release Date

2013-11-20

Peptides

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL

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