SMTL ID : 5z94.1 (1 other biounit)

Crystal Structure of SIRT3 in complex with H3K4bhb peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.140, C.143, C.164, C.167 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.140, A:C.143, A:C.164, A:C.167

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: P.181, L.182, L.187 Chain B: R.2 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.2, A:L.182 Water bridges: A:L.182 GOL.3: 3 residues within 4Å: Chain A: R.19, A.20, Q.22 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.19, A:A.20 Water bridges: A:R.23

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: V.161, R.163 5 PLIP interactions: 5 interactions with chain A Water bridges: A:V.161, A:R.163, A:R.163, A:R.163 Salt bridges: A:R.163

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.5: 4 residues within 4Å: Chain A: R.108, S.126, R.185, L.188 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.108, A:R.185 Salt bridges: A:R.108, A:R.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Crystal Structure of SIRT3 in complex with H3K4bhb peptide. To Be Published

Release Date

2019-02-06

Peptides

NAD-dependent protein deacetylase sirtuin-3, mitochondrial: A
Gene for histone H3 (germline gene): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

NAD-dependent protein deacetylase sirtuin-3, mitochondrial

Gene for histone H3 (germline gene)

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