SMTL ID : 4c7o.1 (1 other biounit)

The structural basis of FtsY recruitment and GTPase activation by SRP RNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.1: 12 residues within 4Å: Chain A: L.108, Q.109, G.110, K.113, D.138, R.141, T.191, A.192, G.193 Ligands: MG.2, GDP.3, GDP.6 No protein-ligand interaction detected (PLIP) ALF.4: 11 residues within 4Å: Chain B: N.83, G.84, K.87, D.111, R.114, T.164, A.165, G.166 Ligands: GDP.3, MG.5, GDP.6 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.114, D.138, D.190 Ligands: ALF.1, GDP.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.114, H2O.1, H2O.1, H2O.1 MG.5: 4 residues within 4Å: Chain B: T.88, D.163 Ligands: ALF.4, GDP.6 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.88, H2O.4, H2O.4, H2O.4

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.3: 22 residues within 4Å: Chain A: G.110, A.111, G.112, K.113, T.114, T.115, K.119, R.141, Q.147, K.249, D.251, G.274, V.275, G.276, E.277 Chain B: N.83, G.84, R.114, L.168 Ligands: ALF.1, MG.2, ALF.4 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.110, A:A.111, A:G.112, A:K.113, A:T.114, A:T.114, A:T.115, A:T.115, A:K.119, A:Q.147, A:K.249, A:K.249, A:G.276 Water bridges: A:T.114, A:T.115, A:R.141, A:G.193, A:E.277, A:E.277 Salt bridges: A:K.113, A:R.141, A:R.141, A:D.251, A:E.277 pi-Cation interactions: A:K.249 GDP.6: 21 residues within 4Å: Chain A: Q.109, R.141, L.195 Chain B: G.84, V.85, G.86, K.87, T.88, T.89, K.93, Q.120, T.227, K.228, D.230, G.253, V.254, G.255, E.256 Ligands: ALF.1, ALF.4, MG.5 24 PLIP interactions: 21 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.84, B:V.85, B:G.86, B:K.87, B:T.88, B:T.89, B:T.89, B:K.93, B:Q.120, B:Q.120, B:K.228, B:G.255, B:E.256, A:Q.109 Water bridges: B:T.88, B:T.88, B:T.89, B:G.166, A:R.141 Salt bridges: B:K.87, B:D.230, B:E.256, A:R.141 pi-Cation interactions: B:K.228

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voigts-Hoffmann, F. et al., The Structural Basis of Ftsy Recruitment and Gtpase Activation by Srp RNA. Mol.Cell (2013)

Release Date

2013-11-20

Peptides

SIGNAL RECOGNITION PARTICLE PROTEIN: A
SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SIGNAL RECOGNITION PARTICLE PROTEIN

SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY

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