SMTL ID : 4cc1.1 (1 other biounit)

Notch ligand, Jagged-1, contains an N-terminal C2 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: K.167, N.184, N.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.167, A:N.184

1 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.2: 5 residues within 4Å: Chain A: G.278, T.280, S.292, C.293, P.294 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: D.41, D.109, S.110 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.41, A:D.109

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: E.197, N.199 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: S.10, H.147, F.148 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: H.126, S.127 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: R.172, F.176 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chilakuri, C.R. et al., Structural Analysis Uncovers Lipid-Binding Properties of Notch Ligands. Cell Rep. (2013)

Release Date

2013-11-27

Peptides

PROTEIN JAGGED-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN JAGGED-1

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