SMTL ID : 4cc1.2 (1 other biounit)

Notch ligand, Jagged-1, contains an N-terminal C2 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.84 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: K.167, N.184, N.186 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.167

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: D.41, D.109, S.110, S.111 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.41, A:D.109, A:S.110, H2O.1

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: G.195, P.196, E.197, N.199 Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 9 residues within 4Å: Chain A: S.10, M.11, Q.12, K.140, Q.141, N.142, H.147, F.148, E.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.10, A:N.142 EDO.5: 5 residues within 4Å: Chain A: N.22, C.23, G.26, A.27, R.28 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.22, A:C.23, A:R.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chilakuri, C.R. et al., Structural Analysis Uncovers Lipid-Binding Properties of Notch Ligands. Cell Rep. (2013)

Release Date

2013-11-27

Peptides

PROTEIN JAGGED-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

PROTEIN JAGGED-1

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