SMTL ID : 4cf7.1 (1 other biounit)

Crystal structure of adenylate kinase from Aquifex aeolicus with MgADP bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: P.8, P.9, G.10, A.11, G.12, K.13, G.14, T.15, R.120, R.124, V.133, Y.134, H.135, Y.138, K.189, P.190, V.191 Ligands: ADP.2 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:P.8, A:G.10, A:A.11, A:G.12, A:K.13, A:G.14, A:T.15, A:T.15, A:R.120, A:Y.134, A:K.189 Water bridges: A:K.13, A:K.13, A:R.120, A:R.120, A:R.120, A:R.120, A:R.124, A:R.124, A:N.139, A:N.139 Salt bridges: A:K.13, A:R.124, A:R.124 pi-Cation interactions: A:R.120 ADP.2: 22 residues within 4Å: Chain A: P.9, G.10, K.13, T.31, G.32, L.35, R.36, M.53, E.57, L.58, V.59, I.64, G.82, F.83, R.85, Q.89, L.121, R.124, R.150, D.152, R.161 Ligands: ADP.1 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.10, A:T.31, A:G.32, A:E.57, A:V.59, A:Q.89, A:Q.89, A:R.161 Water bridges: A:G.14, A:G.14, A:R.36, A:R.36, A:R.85, A:R.124, A:R.161 Salt bridges: A:K.13, A:R.36, A:R.85, A:R.124, A:R.150, A:R.150, A:R.161, A:R.161 pi-Cation interactions: A:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kerns, S.J. et al., The Energy Landscape of Adenylate Kinase During Catalysis. Nat.Struct.Mol.Biol. (2015)

Release Date

2014-12-03

Peptides

ADENYLATE KINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADENYLATE KINASE

Related Entries With Identical Sequence