SMTL ID : 4ike.2 (1 other biounit)

Crystal Structure of a partly open ATP-lid of liganded Adenylate kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 13 residues within 4Å: Chain A: T.31, G.32, L.35, R.36, M.53, E.57, L.58, V.59, I.64, G.82, F.83, R.85, Q.89 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:T.31, A:G.32, A:E.57, A:V.59, A:Q.89, A:Q.89 Water bridges: A:K.13, A:K.13, A:S.30, A:R.36, A:R.36, A:R.36, A:G.56, A:R.85, A:R.85, A:R.161, A:R.161, A:R.161 Salt bridges: A:R.36, A:R.85 pi-Cation interactions: A:R.85

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: P.8, P.9, G.10, A.11, G.12, K.13, G.14, T.15, R.120, R.124, K.189, P.190, V.191 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:G.10, A:A.11, A:G.12, A:K.13, A:G.14, A:T.15, A:T.15, A:R.124, A:K.189 Water bridges: A:R.120, A:R.120, A:R.120, A:R.120, A:R.120, A:R.161, A:V.191 Salt bridges: A:K.13 pi-Cation interactions: A:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, Y.-J. et al., The ATP-Lid Opened Adenylate Kinase with Fully Occupied Substrates. To be Published

Release Date

2014-07-02

Peptides

Adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Adenylate kinase

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