SMTL ID : 4cg4.2 (2 other biounits)

Crystal structure of the CHS-B30.2 domains of TRIM20

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

3 x DHL: 2-AMINO-ETHANETHIOL(Non-covalent)

DHL.1: 12 residues within 4Å: Chain A: F.225, S.227, C.228, I.230, I.263, S.264, R.265, K.266, G.267, N.268, M.269, Y.277 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.266 DHL.2: 6 residues within 4Å: Chain A: E.247, R.306, T.360, I.361, C.362, P.363 No protein-ligand interaction detected (PLIP) DHL.4: 12 residues within 4Å: Chain B: F.225, S.227, C.228, I.230, S.264, R.265, K.266, G.267, N.268, M.269, L.271, Y.277 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.227, B:S.227

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: H.185, G.240, R.241, R.314 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.241 Salt bridges: A:R.241, A:R.314 SO4.5: 4 residues within 4Å: Chain B: H.185, G.240, R.241, R.314 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.241 Salt bridges: B:R.241, B:R.314

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 9 residues within 4Å: Chain B: I.83, Y.87, R.90, E.134, K.135, W.136, T.137, T.138, P.139 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.135, B:T.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weinert, C. et al., Crystal Structure of Trim20 C-Terminal Coiled-Coil/B30.2 Fragment: Implications for the Recognition of Higher Order Oligomers. Sci.Rep. (2015)

Release Date

2015-04-29

Peptides

PYRIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

PYRIN

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