SMTL ID : 4cnm.1

Crystal structure of human 5T4 (Wnt-activated inhibitory factor 1, Trophoblast glycoprotein)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 8 residues within 4Å: Chain A: F.41, T.43, N.68, S.70, Q.90, D.92, I.123 Ligands: CIT.11 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: A.175, R.199, N.200 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.175, A:R.199, A:R.199 NAG.3: 3 residues within 4Å: Chain A: N.23, R.24, N.25 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain A: H.126, S.163, H.165, N.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.163, A:H.165 Water bridges: A:H.165 NAG.5: 2 residues within 4Å: Chain A: N.219, D.248 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.219, A:D.248

5 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 7 residues within 4Å: Chain A: H.95, N.96, P.97, H.126, I.127, V.128, P.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.95, A:H.126, A:V.128 PEG.7: 7 residues within 4Å: Chain A: E.1, T.2, G.3, D.4, C.6, E.11, C.12 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.3, A:C.12, A:C.12 PEG.8: 8 residues within 4Å: Chain A: H.126, V.128, P.129, P.130, E.131, D.132, E.133, H.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.126 Water bridges: A:E.131 PEG.9: 7 residues within 4Å: Chain A: F.82, E.83, H.84, L.85, P.86, P.116, P.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.84, A:L.85 PEG.10: 7 residues within 4Å: Chain A: A.247, V.250, T.251, K.254, N.282, S.283, L.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.251, A:T.251, A:K.254

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.11: 9 residues within 4Å: Chain A: S.70, D.92, S.94, H.95, I.123, N.125, E.160 Ligands: NAG-NAG.1, NAG-NAG.1 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.70, A:D.92, A:S.94, A:N.125 Salt bridges: A:H.95, A:H.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Y. et al., Structural Insights Into the Inhibition of Wnt Signaling by Cancer Antigen 5T4/Wnt-Activated Inhibitory Factor 1. Structure (2014)

Release Date

2014-02-26

Peptides

TROPHOBLAST GLYCOPROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

TROPHOBLAST GLYCOPROTEIN

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