SMTL ID : 4crf.1

Creating novel F1 inhibitors through fragment based lead generation and structure aided drug design

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: F.74, N.104, Q.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.104, A:N.104, A:Q.109 GOL.2: 3 residues within 4Å: Chain A: R.26, H.27 Ligands: R9B.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.26 GOL.3: 4 residues within 4Å: Chain A: A.88, S.207, W.208 Ligands: R9B.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.207

1 x R9B: N-[(1S)-1-benzyl-2-[(6-chloro-2-oxo-1H-quinolin-4-yl)methylamino]-2-oxo-ethyl]-4-hydroxy-2-oxo-1H-quinoline-6-carbo(Non-covalent)

R9B.4: 25 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, Y.134, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, G.211, C.212, G.219, V.220, Y.221 Ligands: GOL.2, GOL.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.28, A:I.141, A:T.206 Hydrogen bonds: A:H.27, A:Y.134, A:Y.134, A:K.185, A:G.186, A:D.187, A:S.188, A:S.188, A:S.188, A:G.211 Water bridges: A:G.209

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: T.5, A.6, Q.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.6 SO4.6: 2 residues within 4Å: Chain A: K.195, W.200 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.11, A:E.11, A:E.11 Salt bridges: A:K.195 SO4.7: 2 residues within 4Å: Chain A: K.117, R.120 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.117, A:R.120 SO4.8: 10 residues within 4Å: Chain A: R.9, G.10, E.11, W.12, P.13, Q.15, I.61, L.62, S.108, L.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.10, A:W.12, A:W.12, A:I.61

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 5 residues within 4Å: Chain A: Y.162, R.163, G.164, H.165, R.217 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fjellstrom, O. et al., Creating Novel Activated Factor Xi Inhibitors Through Fragment Based Lead Generation and Structure Aided Drug Design. Plos One (2015)

Release Date

2015-02-11

Peptides

Coagulation factor XIa light chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XIa light chain

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