SMTL ID : 4crl.1

Crystal structure of human CDK8-Cyclin C in complex with cortistatin A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

1 x C1I: CORTISTATIN A(Non-covalent)

C1I.1: 14 residues within 4Å: Chain A: V.30, Y.35, V.38, A.53, I.82, D.101, Y.102, A.103, D.106, W.108, H.109, A.158, L.161, R.359 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.35, A:V.38, A:A.53, A:I.82, A:W.108, A:A.158, A:L.161 Hydrogen bonds: A:A.103

5 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 4 residues within 4Å: Chain A: P.127, R.128, G.129, M.130 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.128, A:G.129, A:M.130 FMT.3: 5 residues within 4Å: Chain A: E.104, H.105, G.164, E.165, I.354 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.104, A:E.165 FMT.4: 5 residues within 4Å: Chain A: K.55, E.69, I.82, F.100, D.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.55, A:E.69, A:D.176 FMT.5: 3 residues within 4Å: Chain B: D.22, A.76, R.77 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.76 FMT.6: 7 residues within 4Å: Chain B: Q.51, Q.61, A.65, T.68, Y.158, N.183, Y.186 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.61, B:Q.61 Water bridges: B:T.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pelish, H.E. et al., Mediator Kinase Inhibition Further Activates Super-Enhancer- Associated Genes in Aml. Nature (2015)

Release Date

2015-09-23

Peptides

CYCLIN-DEPENDENT KINASE 8: A
CYCLIN-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CYCLIN-DEPENDENT KINASE 8

CYCLIN-C

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