SMTL ID : 5bnj.1

CDK8/CYCC IN COMPLEX WITH 8-{3-Chloro-5-[4-(1-methyl-1H-pyrazol-4-yl)-phenyl]-pyridin- 4-yl}-2,8-diaza-spiro[4.5]decan-1-one

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

hetero-oligomer

Ligands

1 x 4TV: 8-{3-chloro-5-[4-(1-methyl-1H-pyrazol-4-yl)phenyl]pyridin-4-yl}-2,8-diazaspiro[4.5]decan-1-one(Non-covalent)

4TV.1: 16 residues within 4Å: Chain A: V.29, Y.34, V.37, A.52, K.54, I.81, F.99, D.100, Y.101, A.102, D.105, H.108, L.160, A.174, D.175, R.358 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.29, A:Y.34 Hydrogen bonds: A:A.102, A:D.175 pi-Cation interactions: A:R.358

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 3 residues within 4Å: Chain A: R.15, E.16 Chain B: E.146 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:E.146, A:E.16, A:E.16 FMT.3: 3 residues within 4Å: Chain A: R.73, V.86 Chain B: D.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.73, A:V.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dale, T. et al., A selective chemical probe for exploring the role of CDK8 and CDK19 in human disease. Nat.Chem.Biol. (2015)

Release Date

2015-10-14

Peptides

Cyclin-dependent kinase 8: A
Cyclin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 8

Cyclin-C

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