SMTL ID : 4cta.1

Competence or damage-inducible protein CinA from Thermus thermophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 16 residues within 4Å: Chain A: L.13, T.18, L.19, D.20, T.21, N.22, G.68, G.69, L.70, G.71, P.72, D.76, P.151, G.152, P.153, E.156 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.20, A:T.21, A:N.22, A:N.22, A:G.69, A:L.70, A:G.71, A:D.76, A:G.152 ATP.8: 21 residues within 4Å: Chain A: Y.209, P.210, K.211 Chain B: E.12, L.13, T.18, L.19, D.20, T.21, N.22, S.67, G.68, G.69, L.70, G.71, D.76, P.151, G.152, P.153, E.156 Ligands: MG.9 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:T.18, B:D.20, B:T.21, B:N.22, B:S.67, B:G.68, B:G.69, B:L.70, B:G.71, B:G.152 Water bridges: B:N.22, B:N.22, B:E.156

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: G.341, V.342, A.343, G.344, P.345, D.346 Ligands: GOL.5, SO4.10 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.341, A:A.343, A:G.344, A:D.346, A:D.346 GOL.5: 8 residues within 4Å: Chain A: S.269, L.270, Y.296, K.301, G.341 Chain B: S.286 Ligands: GOL.2, SO4.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.301, A:K.301, A:G.341, A:G.341 GOL.6: 7 residues within 4Å: Chain A: W.183, G.184, I.185, K.211, G.214, V.215, R.383 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:W.183, A:G.184, A:I.185, A:I.185, A:K.211, A:K.211, A:R.383, A:R.383 Water bridges: A:V.215 GOL.11: 7 residues within 4Å: Chain B: W.183, G.184, K.211, V.212, G.214, F.373, R.383 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.184, B:G.214, B:R.383 Water bridges: B:V.215 GOL.12: 7 residues within 4Å: Chain B: G.341, V.342, A.343, G.344, P.345, D.346 Ligands: SO4.3 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.341, B:A.343, B:G.344, B:G.344, B:D.346, B:D.346, B:R.377

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 7 residues within 4Å: Chain A: P.283, G.284, A.285, S.286 Chain B: Y.296, R.377 Ligands: GOL.12 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.284, A:A.285, A:S.286, B:Y.296 Salt bridges: B:R.377 SO4.4: 1 residues within 4Å: Chain A: R.167 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.167 SO4.10: 8 residues within 4Å: Chain A: Y.296, R.377 Chain B: P.283, G.284, A.285, S.286 Ligands: GOL.2, GOL.5 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.284, B:A.285, B:S.286 Salt bridges: A:R.377

2 x NA: SODIUM ION(Non-functional Binders)

NA.7: 4 residues within 4Å: Chain A: H.213, T.248, L.249, Y.386 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.249 Water bridges: A:A.250 NA.13: 5 residues within 4Å: Chain A: T.266, E.268, Y.289, G.292, V.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.266, A:V.293

1 x MG: MAGNESIUM ION(Non-covalent)

MG.9: 3 residues within 4Å: Chain B: G.71, D.76 Ligands: ATP.8 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.76, B:D.76, H2O.2, H2O.2, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karuppiah, V. et al., Structure and Mechanism of the Bifunctional Cina Enzyme from Thermus Thermophilus. J.Biol.Chem. (2014)

Release Date

2014-10-15

Peptides

CINA-LIKE PROTEIN: A
CINA-LIKE PROTEIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CINA-LIKE PROTEIN

CINA-LIKE PROTEIN

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