SMTL ID : 4cty.1

Structure of bovine endothelial nitric oxide synthase heme domain in complex with (R)-6-(2-Amino-2-(3-(2-(6-amino-4-methylpyridin-2-yl) ethyl)phenyl)ethyl)-4-methylpyridin-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 15 residues within 4Å: Chain A: W.141, R.146, C.147, V.148, G.149, S.189, F.316, S.317, G.318, W.319, E.324, W.410, F.436 Ligands: H4B.2, S5D.3 13 PLIP interactions: 13 interactions with chain A, Hydrophobic interactions: A:W.141, A:W.141, A:F.316, A:F.316, A:F.316, A:W.319, A:E.324, A:F.436 Hydrogen bonds: A:R.146, A:E.324, A:E.324 pi-Stacking: A:W.141 Metal complexes: A:C.147 HEM.8: 18 residues within 4Å: Chain B: W.141, R.146, C.147, V.148, G.149, S.189, M.302, F.316, S.317, G.318, W.319, M.321, E.324, V.381, W.410, F.436 Ligands: H4B.9, S5D.10 13 PLIP interactions: 13 interactions with chain B, Hydrophobic interactions: B:W.141, B:W.141, B:F.316, B:F.316, B:F.316, B:F.316, B:W.319, B:E.324, B:V.381, B:F.436, B:F.436 pi-Stacking: B:W.141 Metal complexes: B:C.147

2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)

H4B.2: 12 residues within 4Å: Chain A: S.65, V.67, R.328, A.409, W.410 Chain B: W.408, F.423, H.424, Q.425, E.426 Ligands: HEM.1, GOL.5 11 PLIP interactions: 2 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:E.426 Water bridges: B:H.424, A:S.65, A:R.328, A:W.410 Hydrogen bonds: A:R.328, A:A.409, A:W.410 pi-Stacking: A:W.410, A:W.410 pi-Cation interactions: A:W.410 H4B.9: 12 residues within 4Å: Chain A: W.408, F.423, H.424, Q.425, E.426 Chain B: S.65, V.67, R.328, A.409, W.410 Ligands: HEM.8, GOL.12 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.328, B:A.409, B:W.410 Water bridges: B:R.328 pi-Stacking: B:W.410, B:W.410 Hydrophobic interactions: A:E.426

2 x S5D: (R)-6-(2-Amino-2-(3-(2-(6-amino-4-methylpyridin-2-yl)ethyl)phenyl)ethyl)-4-methylpyridin-2-amine(Non-covalent)

S5D.3: 13 residues within 4Å: Chain A: V.67, R.146, Q.210, P.297, V.299, F.316, G.318, W.319, Y.320, E.324, Y.438 Chain B: W.37 Ligands: HEM.1 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.67, A:P.297, A:F.316, A:Y.438, A:Y.438, B:W.37 Hydrogen bonds: A:R.146, A:M.321, A:E.324 S5D.10: 14 residues within 4Å: Chain A: W.37 Chain B: V.67, R.146, Q.210, P.297, V.299, G.318, W.319, Y.320, M.321, E.324, Y.438 Ligands: HEM.8, GOL.12 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:V.67, B:P.297, B:Y.438, B:Y.438, A:W.37 Hydrogen bonds: B:R.146, B:M.321, B:E.324

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 5 residues within 4Å: Chain A: G.149, I.151, W.319, V.381, S.389 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.151 Hydrogen bonds: A:W.319, A:S.389 ACT.11: 4 residues within 4Å: Chain B: G.149, W.319, V.381, S.389 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.389, B:S.389

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: V.67, R.328, H.334, W.410 Chain B: W.37 Ligands: H4B.2 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.328, A:R.328, B:W.37 Water bridges: A:R.328, B:H.424 GOL.6: 10 residues within 4Å: Chain A: G.64, S.65, D.407, W.408, A.409 Chain B: G.64, S.65, D.407, W.408, A.409 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:G.64, B:W.408, B:A.409, A:D.407, A:W.408, A:A.409 GOL.12: 7 residues within 4Å: Chain A: W.37 Chain B: V.67, R.328, H.334, W.410 Ligands: H4B.9, S5D.10 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Water bridges: A:H.424, B:D.332 Hydrogen bonds: B:R.328, B:R.328, B:H.334

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 5 residues within 4Å: Chain A: C.57, C.62 Chain B: C.57, C.62, G.64 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.57, B:C.62, A:C.57, A:C.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, S. et al., Nitric Oxide Synthase Inhibitors that Interact with Both a Heme Propionate and Tetrahydrobiopterin Show High Isoform Selectivity. J.Med.Chem. (2014)

Release Date

2014-05-07

Peptides

NITRIC OXIDE SYNTHASE, ENDOTHELIAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NITRIC OXIDE SYNTHASE, ENDOTHELIAL

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