SMTL ID : 4cvk.1

PaMurF in complex with UDP-MurNAc-tripeptide (mDAP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

monomer

Ligands

1 x ALA- FGA- API: ALA-FGA-API(Non-covalent)

ALA-FGA-API.1: 12 residues within 4Å: Chain A: K.113, N.140, L.141, N.142, N.143, L.145, G.146, A.167, S.168, R.169, E.172 Ligands: MUB.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.141, A:N.143, A:L.145 Hydrogen bonds: A:N.140, A:N.140, A:N.142, A:N.142, A:N.142, A:N.143, A:N.143, A:G.146, A:S.168, A:S.168, A:S.168, A:E.172 Salt bridges: A:K.113

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.2: 13 residues within 4Å: Chain A: T.30, D.31, S.32, R.33, F.41, L.44, G.46, P.47, R.48, F.49, G.51, Y.54 Ligands: MUB.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.49 Hydrogen bonds: A:T.30, A:D.31, A:S.32, A:S.32, A:R.33, A:R.48, A:F.49 Water bridges: A:T.30, A:D.31, A:L.44, A:L.44 Salt bridges: A:R.33 pi-Stacking: A:Y.54 pi-Cation interactions: A:R.33

1 x MUB: N-acetyl-alpha-muramic acid(Non-covalent)

MUB.3: 5 residues within 4Å: Chain A: N.143, L.145 Ligands: ALA-FGA-API.1, ALA-FGA-API.1, UDP.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.145 Hydrogen bonds: A:N.143 Water bridges: A:D.31 Salt bridges: A:R.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Majce, V. et al., Pamurf in Complex with Udp-Murnac-Tripeptide (Mdap). To be Published

Release Date

2015-04-22

Peptides

UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase

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