SMTL ID : 4cwa.1 (1 other biounit)

Structure of Plasmodium Falciparum Spermidine Synthase in Complex with 1H-Benzimidazole-2-pentanamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x JA2: 5-(1H-benzimidazol-2-yl)pentan-1-amine(Non-covalent)

JA2.1: 17 residues within 4Å: Chain A: W.13, V.53, Q.55, Y.64, G.87, G.88, D.89, E.109, V.114, D.158, S.159, S.160, D.161, Q.191, Y.226, P.227, I.231 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Q.55, A:Y.64, A:V.114, A:Y.226 Hydrogen bonds: A:Q.55, A:Q.55, A:D.161 JA2.2: 17 residues within 4Å: Chain B: W.13, V.53, Q.55, Y.64, G.87, G.88, D.89, E.109, V.114, D.158, S.159, S.160, D.161, Q.191, Y.226, P.227, I.231 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Q.55, B:Y.64, B:V.114, B:Y.226 Hydrogen bonds: B:Q.55, B:Q.55, B:D.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sprenger, J. et al., Three-Dimensional Structures of Plasmodium Falciparum Spermidine Synthase with Bound Inhibitors Suggest New Strategies for Drug Design. Acta Crystallogr.,Sect.D (2015)

Release Date

2014-10-08

Peptides

SPERMIDINE SYNTHASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

SPERMIDINE SYNTHASE

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