SMTL ID : 4cwb.1

Staphylococcus aureus 7,8-Dihydro-6-hydroxymethylpterin- pyrophosphokinase in complex with AMPCPP and an inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.98, D.100 Ligands: MG.2, APC.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.98, A:D.100, H2O.4, H2O.4 MG.2: 4 residues within 4Å: Chain A: D.98, D.100 Ligands: MG.1, APC.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.98, A:D.100, H2O.3, H2O.4

1 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.3: 18 residues within 4Å: Chain A: L.74, L.78, R.86, R.91, R.95, D.98, D.100, I.101, K.113, L.114, S.115, V.116, H.118, R.120, R.124 Ligands: MG.1, MG.2, X6L.5 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.86, A:R.86, A:R.91, A:R.95, A:R.95, A:I.101, A:S.115, A:S.115 Water bridges: A:R.91, A:R.91, A:R.91, A:R.91, A:R.91, A:D.98, A:R.124 Salt bridges: A:R.91, A:H.118, A:R.120, A:R.124

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.4: 8 residues within 4Å: Chain A: I.15, H.85, R.86, I.87, R.88, P.94, R.95, T.96 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.85, A:I.87, A:R.88, A:R.88, A:P.94, A:T.96

1 x X6L: 2-amino-8-[2-oxo-2-(4-phenylphenyl)ethyl]sulfanyl-1,9-dihydropurin-6-one(Non-covalent)

X6L.5: 13 residues within 4Å: Chain A: T.46, A.47, P.48, V.49, G.50, F.57, N.59, R.91, W.92, R.95, R.124, F.126 Ligands: APC.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:T.46, A:A.47, A:V.49, A:V.49, A:N.59, A:N.59 Water bridges: A:A.47, A:R.95, A:R.95, A:R.95 pi-Stacking: A:F.57, A:F.57, A:F.126 pi-Cation interactions: A:F.57, A:F.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dennis, M.L. et al., Structure-Based Design and Development of Functionalized Mercaptoguanine Derivatives as Inhibitors of the Folate Biosynthesis Pathway Enzyme 6-Hydroxymethyl-7,8-Dihydropterin Pyrophosphokinase from Staphylococcus Aureus. J.Med.Chem. (2014)

Release Date

2015-01-28

Peptides

7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

7,8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE

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