- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.67 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x XFN: 6,6'-[(5-aminobenzene-1,3-diyl)diethane-2,1-diyl]bis(4-methylpyridin-2-amine)(Non-covalent)
XFN.3: 18 residues within 4Å:- Chain A: H.128, Q.129, R.132, P.216, I.218, F.235, G.237, W.238, Y.239, E.243, R.247, T.328, W.329
- Chain B: F.342
- Ligands: HEM.1, CL.2, POL.9, GOL.15
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:I.218, A:F.235, A:W.329
- Hydrogen bonds: A:H.128, A:E.243, A:T.328
- Water bridges: A:R.132
- pi-Stacking: A:W.329
- pi-Cation interactions: A:R.247
XFN.12: 18 residues within 4Å:- Chain A: F.342
- Chain B: H.128, Q.129, R.132, P.216, I.218, F.235, G.237, W.238, Y.239, E.243, R.247, T.328, W.329
- Ligands: GOL.6, HEM.10, CL.11, POL.18
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:I.218, B:F.235, B:W.329
- Hydrogen bonds: B:H.128, B:E.243, B:T.328
- Water bridges: B:R.132
- pi-Stacking: B:W.329
- pi-Cation interactions: B:R.247
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 3 residues within 4Å:- Chain A: E.156, W.160, R.161
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.160
GOL.5: 2 residues within 4Å:- Chain A: Y.271, N.272
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.272, A:N.272
- Water bridges: A:T.273
GOL.6: 5 residues within 4Å:- Chain A: W.327, F.342, R.344
- Chain B: T.328
- Ligands: XFN.12
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.328, B:T.328
GOL.7: 7 residues within 4Å:- Chain A: R.142, I.143, G.144, D.166, R.254, Y.255, K.257
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:G.144, A:D.166, A:K.257, A:K.257
- Water bridges: A:R.142, A:D.166, A:R.254
GOL.13: 3 residues within 4Å:- Chain B: E.156, W.160, R.161
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:W.160
GOL.14: 2 residues within 4Å:- Chain B: Y.271, N.272
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.272, B:N.272
- Water bridges: B:T.273
GOL.15: 5 residues within 4Å:- Chain A: T.328
- Chain B: W.327, F.342, R.344
- Ligands: XFN.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.328, A:T.328
GOL.16: 7 residues within 4Å:- Chain B: R.142, I.143, G.144, D.166, R.254, Y.255, K.257
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:G.144, B:D.166, B:K.257, B:K.257
- Water bridges: B:R.142, B:D.166, B:R.254
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.8: 7 residues within 4Å:- Chain A: A.337, A.338, H.343
- Chain B: A.250, D.251, E.252, L.258
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.252, A:T.339
- Water bridges: B:A.246, B:E.252
PEG.17: 7 residues within 4Å:- Chain A: A.250, D.251, E.252, L.258
- Chain B: A.337, A.338, H.343
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:E.252, B:T.339
- Water bridges: A:A.246, A:E.252
- 2 x POL: N-PROPANOL(Non-covalent)
POL.9: 4 residues within 4Å:- Chain A: H.128, R.132, A.147
- Ligands: XFN.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.132, A:R.132
POL.18: 4 residues within 4Å:- Chain B: H.128, R.132, A.147
- Ligands: XFN.12
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.132, B:R.132
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Holden, J.K. et al., Structure-Based Design of Bacterial Nitric Oxide Synthase Inhibitors. J.Med.Chem. (2015)
- Release Date
- 2015-01-14
- Peptides
- NITRIC OXIDE SYNTHASE OXYGENASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
SMTL ID : 4d3j.1
Structure of Bacillus subtilis Nitric Oxide Synthase in complex with 6,6'-(2,2'-(5-amino-1,3-phenylene)bis(ethane-2,1-diyl))bis(4- methylpyridin-2-amine)
NITRIC OXIDE SYNTHASE OXYGENASE
Toggle Identical (AB)Related Entries With Identical Sequence
4d3i.1 | 4d3k.1 | 4d3m.1 | 4d3n.1 | 4d3o.1 | 4d3t.1 | 4d7h.1 | 4d7j.1 | 4lwa.1 | 4lwa.2 | 4lwb.1 | 4lwb.2 | 4ug5.1 | 4ug6.1 | 4ug7.1 | 4ug8.1 | 4ug9.1 | 4uga.1 | 4ugb.1 | 4ugc.1 | 4ugd.1 | 4uge.1 | 4ugf.1 | 4ugg.1 | 4ugh.1 | 4ugi.1 | 4ugj.1 | 4ugk.1 | 4ugl.1 | 4ugm.1 more...less...4ugn.1 | 4ugo.1 | 4ugp.1 | 4ugq.1 | 4ugr.1 | 4ugs.1 | 4ugt.1 | 4ugu.1 | 4ugx.1 | 4ugy.1 | 4uqr.1 | 4uqs.1 | 5g65.1 | 5g66.1 | 5g67.1 | 5g68.1 | 5g69.1 | 5g6a.1 | 5g6b.1 | 5g6d.1 | 5g6e.1 | 5g6f.1 | 5g6g.1 | 5g6h.1 | 5g6j.1 | 5g6l.1 | 5g6m.1 | 5g6n.1 | 5g6o.1 | 5g6q.1 | 6xcx.1 | 6xk3.1 | 6xk4.1 | 6xk5.1 | 6xk6.1 | 6xk7.1 | 6xk8.1 | 6xmc.1