- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x RFQ: N-{3-[(1S)-2-(3-{(Z)-[amino(thiophen-2-yl)methylidene]amino}phenoxy)-1-hydroxyethyl]phenyl}thiophene-2-carboximidamide(Non-covalent)
RFQ.3: 17 residues within 4Å:- Chain A: H.128, P.216, I.218, F.235, N.236, G.237, W.238, Y.239, E.243, R.247, T.328, W.329
- Chain B: W.327, F.342
- Ligands: HEM.1, POL.6, GOL.19
12 PLIP interactions:10 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:P.216, A:I.218, A:I.218, A:F.235, A:W.329, B:W.327
- Hydrogen bonds: A:H.128, A:W.238, A:E.243, A:R.247
- pi-Stacking: A:W.329, B:F.342
RFQ.13: 17 residues within 4Å:- Chain A: W.327, F.342
- Chain B: H.128, P.216, I.218, F.235, N.236, G.237, W.238, Y.239, E.243, R.247, T.328, W.329
- Ligands: GOL.9, HEM.11, POL.16
12 PLIP interactions:10 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:P.216, B:I.218, B:I.218, B:F.235, B:W.329, A:W.327
- Hydrogen bonds: B:H.128, B:W.238, B:E.243, B:R.247
- pi-Stacking: B:W.329, A:F.342
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 4 residues within 4Å:- Chain A: W.238, S.298, I.299, V.300
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:W.238, A:I.299
- Water bridges: A:V.297, A:S.298
GOL.5: 6 residues within 4Å:- Chain A: R.65, M.221, Y.355, F.356, Y.357
- Ligands: HEM.1
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:Y.357
GOL.8: 2 residues within 4Å:- Chain A: V.183, W.184
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:W.184
- Water bridges: A:L.158, A:W.184
GOL.9: 5 residues within 4Å:- Chain A: W.327, R.344, S.345
- Chain B: T.328
- Ligands: RFQ.13
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.344, B:T.328, B:T.328
GOL.10: 6 residues within 4Å:- Chain A: Y.136, E.137, S.138, E.141, I.143, R.164
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.138, A:E.141, A:R.164, A:R.164
GOL.14: 4 residues within 4Å:- Chain B: W.238, S.298, I.299, V.300
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:W.238, B:I.299
- Water bridges: B:V.297, B:S.298
GOL.15: 6 residues within 4Å:- Chain B: R.65, M.221, Y.355, F.356, Y.357
- Ligands: HEM.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Y.357
GOL.18: 2 residues within 4Å:- Chain B: V.183, W.184
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:W.184
- Water bridges: B:L.158, B:W.184
GOL.19: 5 residues within 4Å:- Chain A: T.328
- Chain B: W.327, R.344, S.345
- Ligands: RFQ.3
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.344, A:T.328, A:T.328
GOL.20: 6 residues within 4Å:- Chain B: Y.136, E.137, S.138, E.141, I.143, R.164
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.138, B:E.141, B:R.164, B:R.164
- 4 x POL: N-PROPANOL(Non-covalent)
POL.6: 7 residues within 4Å:- Chain A: E.243, R.247, N.248, R.254
- Ligands: HEM.1, CL.2, RFQ.3
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:R.247
POL.7: 5 residues within 4Å:- Chain A: G.144, D.166, R.254, Y.255, K.257
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.257, A:K.257
- Water bridges: A:D.166
POL.16: 7 residues within 4Å:- Chain B: E.243, R.247, N.248, R.254
- Ligands: HEM.11, CL.12, RFQ.13
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:R.247
POL.17: 5 residues within 4Å:- Chain B: G.144, D.166, R.254, Y.255, K.257
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.257, B:K.257
- Water bridges: B:D.166
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Holden, J.K. et al., Structure-Based Design of Bacterial Nitric Oxide Synthase Inhibitors. J.Med.Chem. (2015)
- Release Date
- 2015-01-14
- Peptides
- NITRIC OXIDE SYNTHASE OXYGENASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
SMTL ID : 4d3t.1
Structure of Bacillus subtilis Nitric Oxide Synthase in complex with N-{3-[(1S)-2-(3-{(Z)-[amino(thiophen-2-yl)methylidene]amino}phenoxy)-1-hydroxyethyl]phenyl}thiophene-2-carboximidamide
NITRIC OXIDE SYNTHASE OXYGENASE
Toggle Identical (AB)Related Entries With Identical Sequence
4d3i.1 | 4d3j.1 | 4d3k.1 | 4d3m.1 | 4d3n.1 | 4d3o.1 | 4d7h.1 | 4d7j.1 | 4lwa.1 | 4lwa.2 | 4lwb.1 | 4lwb.2 | 4ug5.1 | 4ug6.1 | 4ug7.1 | 4ug8.1 | 4ug9.1 | 4uga.1 | 4ugb.1 | 4ugc.1 | 4ugd.1 | 4uge.1 | 4ugf.1 | 4ugg.1 | 4ugh.1 | 4ugi.1 | 4ugj.1 | 4ugk.1 | 4ugl.1 | 4ugm.1 more...less...4ugn.1 | 4ugo.1 | 4ugp.1 | 4ugq.1 | 4ugr.1 | 4ugs.1 | 4ugt.1 | 4ugu.1 | 4ugx.1 | 4ugy.1 | 4uqr.1 | 4uqs.1 | 5g65.1 | 5g66.1 | 5g67.1 | 5g68.1 | 5g69.1 | 5g6a.1 | 5g6b.1 | 5g6d.1 | 5g6e.1 | 5g6f.1 | 5g6g.1 | 5g6h.1 | 5g6j.1 | 5g6l.1 | 5g6m.1 | 5g6n.1 | 5g6o.1 | 5g6q.1 | 6xcx.1 | 6xk3.1 | 6xk4.1 | 6xk5.1 | 6xk6.1 | 6xk7.1 | 6xk8.1 | 6xmc.1