- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x JA3: 5-ethyl-4-fluoro-2-[(2-fluoropyridin-3-yl)oxy]phenol(Non-covalent)
JA3.2: 14 residues within 4Å:- Chain A: A.121, F.122, A.123, L.128, Y.173, Y.183, M.186, K.190, S.223, A.224, V.227, F.230, I.233
- Ligands: NAP.1
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:L.128, A:Y.173, A:Y.173, A:Y.173, A:Y.183, A:V.227, A:I.233
- Hydrogen bonds: A:Y.183
- Water bridges: A:A.123
- pi-Stacking: A:Y.173
JA3.3: 13 residues within 4Å:- Chain B: A.121, F.122, A.123, L.128, Y.173, Y.183, M.186, K.190, S.223, A.224, V.227, F.230
- Ligands: NAP.6
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:L.128, B:Y.173, B:Y.173, B:Y.173, B:Y.183, B:V.227
- Hydrogen bonds: B:Y.183, B:Y.183
- Water bridges: B:A.123, B:S.223
JA3.10: 14 residues within 4Å:- Chain C: A.121, F.122, A.123, L.128, Y.173, Y.183, M.186, K.190, S.223, A.224, V.227, F.230, I.233
- Ligands: NAP.9
8 PLIP interactions:8 interactions with chain C- Hydrophobic interactions: C:L.128, C:Y.173, C:Y.173, C:Y.173, C:I.233
- Hydrogen bonds: C:Y.183
- Water bridges: C:A.123
- pi-Stacking: C:Y.173
JA3.11: 14 residues within 4Å:- Chain D: A.121, F.122, A.123, L.128, Y.173, Y.183, M.186, K.190, S.223, A.224, V.227, F.230, I.233
- Ligands: NAP.15
11 PLIP interactions:11 interactions with chain D- Hydrophobic interactions: D:L.128, D:Y.173, D:Y.173, D:Y.173, D:Y.183, D:I.233
- Hydrogen bonds: D:Y.183, D:Y.183
- Water bridges: D:A.123, D:S.223
- pi-Stacking: D:Y.173
- 4 x GLU: GLUTAMIC ACID(Non-covalent)
GLU.4: 6 residues within 4Å:- Chain A: R.129, G.228, G.229, F.230, N.231, T.232
8 PLIP interactions:4 interactions with chain A, 4 Ligand-Ligand interactions- Hydrogen bonds: A:G.229, A:N.231, A:T.232, E.4, E.4, E.4, E.4
- Salt bridges: A:R.129
GLU.7: 6 residues within 4Å:- Chain B: R.129, G.228, G.229, F.230, N.231, T.232
5 PLIP interactions:5 interactions with chain B,- Hydrogen bonds: B:R.129, B:G.229, B:N.231, B:T.232
- Salt bridges: B:R.129
GLU.13: 5 residues within 4Å:- Chain C: R.129, G.229, F.230, N.231, T.232
6 PLIP interactions:4 interactions with chain C, 2 Ligand-Ligand interactions- Hydrogen bonds: C:G.229, C:N.231, C:T.232, E.13, E.13
- Salt bridges: C:R.129
GLU.17: 1 residues within 4Å:- Chain A: K.225
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Ligand interactions- Salt bridges: A:K.225
- Hydrogen bonds: E.17, E.17, E.17, E.17
- 5 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
MRD.5: 7 residues within 4Å:- Chain A: D.114, G.166, N.208, R.210, L.260, S.261, D.262
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.210, A:L.260
MRD.8: 9 residues within 4Å:- Chain B: K.33, D.114, G.166, S.167, N.208, R.210, L.260, S.261, D.262
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:D.262
- Hydrogen bonds: B:R.210, B:L.260
- Water bridges: B:D.114
MRD.12: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MRD.14: 9 residues within 4Å:- Chain C: K.33, D.114, G.166, S.167, N.208, R.210, L.260, S.261, D.262
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.210, C:L.260
MRD.16: 8 residues within 4Å:- Chain D: K.33, D.114, G.166, N.208, R.210, L.260, S.261, D.262
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.210, D:L.260
- Water bridges: D:D.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schiebel, J. et al., An Ordered Water Channel in Staphylococcus Aureus Fabi: Unraveling the Mechanism of Substrate Recognition and Reduction. Biochemistry (2015)
- Release Date
- 2015-03-04
- Peptides
- ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH]: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 4 x JA3: 5-ethyl-4-fluoro-2-[(2-fluoropyridin-3-yl)oxy]phenol(Non-covalent)
- 4 x GLU: GLUTAMIC ACID(Non-covalent)
- 5 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schiebel, J. et al., An Ordered Water Channel in Staphylococcus Aureus Fabi: Unraveling the Mechanism of Substrate Recognition and Reduction. Biochemistry (2015)
- Release Date
- 2015-03-04
- Peptides
- ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH]: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H