- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 2 x GLC- GLC- GLC- GLC- GLC- GLC: Cyclohexakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)
- 13 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)
C8E.3: 5 residues within 4Å:- Chain A: V.40, G.41, T.42, W.297, A.335
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.335
C8E.4: 9 residues within 4Å:- Chain A: F.246, A.249, V.287, Y.289, A.301, E.302, Y.303, Y.332
- Ligands: C8E.12
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.246, A:F.246, A:A.249
C8E.5: 7 residues within 4Å:- Chain A: I.153, P.155, E.173, Y.174, Y.192, I.215
- Ligands: C8E.13
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.153, A:Y.174, A:Y.174
C8E.6: 14 residues within 4Å:- Chain A: P.155, Y.156, S.170, N.171, A.194, L.195, F.196, F.211, Y.212, Y.213, R.236, Y.237, I.238
- Ligands: C8E.13
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.155
C8E.7: 5 residues within 4Å:- Chain A: I.105, Q.107, F.109, Y.131, R.133
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.109
- Hydrogen bonds: A:Q.107
- Water bridges: A:R.133, A:R.133
C8E.8: 7 residues within 4Å:- Chain A: Y.159, Y.164, M.166, G.167, P.198
- Ligands: C8E.9, C8E.10
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:P.198
C8E.9: 3 residues within 4Å:- Chain A: W.121, Y.159
- Ligands: C8E.8
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:W.121, A:Y.159
C8E.10: 4 residues within 4Å:- Chain A: Y.164, M.166, K.200
- Ligands: C8E.8
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.200
C8E.11: 5 residues within 4Å:- Ligands: GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1
No protein-ligand interaction detected (PLIP)C8E.12: 3 residues within 4Å:- Chain A: Y.46, F.331
- Ligands: C8E.4
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.331
C8E.13: 7 residues within 4Å:- Chain A: T.123, G.124, L.125, P.155
- Ligands: C8E.5, C8E.6, C8E.14
No protein-ligand interaction detected (PLIP)C8E.14: 4 residues within 4Å:- Chain A: K.113, H.115, L.117
- Ligands: C8E.13
No protein-ligand interaction detected (PLIP)C8E.15: 6 residues within 4Å:- Ligands: GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC.2
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.300
- Water bridges: A:R.255, A:R.255, A:R.255
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- van den Berg, B. et al., Outer-membrane translocation of bulky small molecules by passive diffusion. Proc. Natl. Acad. Sci. U.S.A. (2015)
- Release Date
- 2015-06-03
- Peptides
- CYMA: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 2 x GLC- GLC- GLC- GLC- GLC- GLC: Cyclohexakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)
- 13 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- van den Berg, B. et al., Outer-membrane translocation of bulky small molecules by passive diffusion. Proc. Natl. Acad. Sci. U.S.A. (2015)
- Release Date
- 2015-06-03
- Peptides
- CYMA: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.