- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 2 x GLC- GLC- GLC- GLC- GLC- GLC: Cyclohexakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)
- 17 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)
C8E.3: 11 residues within 4Å:- Chain A: T.42, S.43, Y.289, Q.291, A.301, A.333, Q.334, A.335
- Ligands: C8E.4, C8E.5, C8E.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.42, A:T.42
C8E.4: 9 residues within 4Å:- Chain A: Y.289, Q.291, S.292, I.293, G.294, A.299, K.300, A.301
- Ligands: C8E.3
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.289, A:A.299, A:A.301
C8E.5: 3 residues within 4Å:- Chain A: I.293, W.297
- Ligands: C8E.3
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:I.293, A:I.293, A:W.297, A:W.297
C8E.6: 4 residues within 4Å:- Chain A: Y.73, Y.84, F.109
- Ligands: C8E.11
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.109
C8E.7: 8 residues within 4Å:- Chain A: F.246, A.249, V.287, Y.289, A.301, F.331
- Ligands: C8E.3, C8E.8
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.246, A:F.246, A:A.249, A:Y.289, A:Y.289, A:F.331
C8E.8: 5 residues within 4Å:- Chain A: V.287, Y.303, H.329
- Ligands: C8E.7, C8E.9
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.287
C8E.9: 6 residues within 4Å:- Chain A: Y.46, D.48, Y.303, H.329, F.331
- Ligands: C8E.8
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:Y.46, A:Y.46, A:D.48, A:Y.303, A:H.329
C8E.10: 4 residues within 4Å:- Chain A: V.44, N.66, V.68, I.88
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.44
- Hydrogen bonds: A:N.66
C8E.11: 4 residues within 4Å:- Chain A: Q.107, F.109, Y.131
- Ligands: C8E.6
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.107, A:Q.107
C8E.12: 6 residues within 4Å:- Ligands: GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1, GLC-GLC-GLC-GLC-GLC-GLC.1
No protein-ligand interaction detected (PLIP)C8E.13: 15 residues within 4Å:- Chain A: P.155, Y.156, L.157, S.170, N.171, L.172, A.194, F.196, F.211, Y.212, Y.213, R.236, Y.237, I.238, V.258
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.157, A:L.172, A:L.172, A:R.236
C8E.14: 2 residues within 4Å:- Chain A: K.200, F.202
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.200
C8E.15: 4 residues within 4Å:- Chain A: W.205, V.242, Y.244, L.252
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.244, A:Y.244, A:L.252
C8E.16: 6 residues within 4Å:- Chain A: Y.159, N.161, M.166, G.167, F.168, P.198
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.159, A:M.166
C8E.17: 4 residues within 4Å:- Chain A: L.117, G.118, N.119, W.121
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:N.119, A:W.121, A:W.121, A:W.121
C8E.18: 4 residues within 4Å:- Chain A: F.72
- Ligands: GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC.2, GLC-GLC-GLC-GLC-GLC-GLC.2
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.72
C8E.19: 6 residues within 4Å:- Chain A: V.256, R.283, K.284, A.285, Y.303, Y.305
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.256, A:Y.305
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- van den Berg, B. et al., Outer-membrane translocation of bulky small molecules by passive diffusion. Proc. Natl. Acad. Sci. U.S.A. (2015)
- Release Date
- 2015-06-03
- Peptides
- CYMA: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- monomer
- Ligands
- 2 x GLC- GLC- GLC- GLC- GLC- GLC: Cyclohexakis-(1-4)-(alpha-D-glucopyranose)(Non-covalent)
- 17 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- van den Berg, B. et al., Outer-membrane translocation of bulky small molecules by passive diffusion. Proc. Natl. Acad. Sci. U.S.A. (2015)
- Release Date
- 2015-06-03
- Peptides
- CYMA: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B - Membrane
-
We predict this structure to be a membrane protein.