SMTL ID : 4d6w.1

Crystal Structure of the low pH conformation of Chandipura Virus glycoprotein G ectodomain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.60 Å

Oligo State

homo-trimer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: I.322, N.323 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 1 residues within 4Å: Chain B: N.323 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain B: N.163 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.163 NAG.4: 2 residues within 4Å: Chain C: N.84, N.163 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.84, C:N.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baquero, E. et al., Structure of the Low Ph Conformation of Chandipura Virus G Reveals Important Features in the Evolution of the Vesiculovirus Glycoprotein. Plos Pathog. (2015)

Release Date

2015-03-04

Peptides

GLYCOPROTEIN G: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

GLYCOPROTEIN G

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